C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing ring finger 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165966 PDZRN4 9606 + 12:41188448-41574590 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298919 PDZRN4-003 41437739-41574582 protein_coding
  ENST00000402685 PDZRN4-001 41188448-41574118 protein_coding
  ENST00000539469 PDZRN4-002 41437683-41574332 protein_coding
  ENST00000548316 PDZRN4-004 41509551-41574590 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298919ENST00000402685ENST00000539469ENST00000548316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298919 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.335±0.00 0.138±0.00 N/A N/A N/A
ENST00000402685 0.092±0.00 1.423±0.00 N/A 0.779±0.17 1.029±0.72 3.031±1.36 0.034±0.00 0.153±0.00 3.304±3.29 0.202±0.10 0.110±0.00 0.547±0.25 1.321±1.25 2.235±0.32
ENST00000539469 0.070±0.00 N/A N/A 0.324±0.11 N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548316 0.145±0.00 0.486±0.00 0.246±0.00 0.411±0.00 0.472±0.35 2.881±1.79 0.048±0.00 0.201±0.02 0.060±0.00 0.553±0.00 0.070±0.00 0.121±0.00 1.238±0.00 1.412±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590
CIL_0009BF CIL_0009BF_0001 VISTA 12:41055225-41655925
CIL_0003DL CIL_0003DL_0002 CGP 12:41188448-42144879

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045687 pdzrn4 PDZ domain containing ring finger 4 protein_coding Danio_rerio
ENSDARG00000086878 PDZRN4 (2 of 2) PDZ domain containing ring finger 4 protein_coding Danio_rerio
ENSMUSG00000036218 Pdzrn4 PDZ domain containing RING finger 4 protein_coding Mus_musculus

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