C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119261 Edc4-002 ENSMUSG00000036270 10090 + 8:105880951-105893208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119261
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119261 3.885±0.71 6.140±1.77 1.587±0.00 4.041±0.07 5.413±1.13 3.943±0.37 1.868±0.19 2.808±1.37 2.433±1.09 4.213±0.57 1.339±0.62 8.361±2.70 2.922±1.47 4.071±1.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0002 CGP 8:105860634-105894908
CIL_0007FU CIL_0007FU_0002 CGP 8:105880881-105895023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISO cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358933 EDC4-001 protein_coding Homo_sapiens 0 2963
ENST00000536072 EDC4-003 retained_intron Homo_sapiens 0 2418
ENST00000572031 EDC4-007 retained_intron Homo_sapiens 0 638
ENST00000572221 EDC4-002 retained_intron Homo_sapiens 0 2278
ENST00000573985 EDC4-015 protein_coding Homo_sapiens 1e-34 150
ENST00000573992 EDC4-004 retained_intron Homo_sapiens 0 2281
ENST00000574770 EDC4-005 processed_transcript Homo_sapiens 0 1567
ENST00000575033 EDC4-013 protein_coding Homo_sapiens 0 503
ENST00000575507 EDC4-012 retained_intron Homo_sapiens 0 647
ENST00000575514 EDC4-011 retained_intron Homo_sapiens 0 531
ENST00000576972 EDC4-010 retained_intron Homo_sapiens 0 283
ENST00000577105 EDC4-014 protein_coding Homo_sapiens 0 414

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