C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136048 Edc4-003 ENSMUSG00000036270 10090 + 8:105881077-105894908 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0002 CGP 8:105860634-105894908
CIL_0007FU CIL_0007FU_0002 CGP 8:105880881-105895023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISO cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358933 EDC4-001 protein_coding Homo_sapiens 0 2032
ENST00000536072 EDC4-003 retained_intron Homo_sapiens 0 1066
ENST00000572031 EDC4-007 retained_intron Homo_sapiens 0 638
ENST00000572221 EDC4-002 retained_intron Homo_sapiens 0 2032
ENST00000573985 EDC4-015 protein_coding Homo_sapiens 1e-34 150
ENST00000573992 EDC4-004 retained_intron Homo_sapiens 0 2032
ENST00000574770 EDC4-005 processed_transcript Homo_sapiens 0 379
ENST00000575033 EDC4-013 protein_coding Homo_sapiens 0 411
ENST00000575507 EDC4-012 retained_intron Homo_sapiens 0 647
ENST00000575514 EDC4-011 retained_intron Homo_sapiens 0 652
ENST00000576972 EDC4-010 retained_intron Homo_sapiens 0 525
ENST00000577105 EDC4-014 protein_coding Homo_sapiens 0 414

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