C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 72
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036323 Srp72 10090 + 5:76974683-76999937 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000101087 Srp72-001 76974683-76999937 protein_coding
  ENSMUST00000120550 Srp72-002 76974707-76998816 protein_coding
  ENSMUST00000125732 Srp72-007 76993993-76994903 retained_intron
  ENSMUST00000132860 Srp72-004 76996974-76999937 retained_intron
  ENSMUST00000141873 Srp72-003 76984095-76995146 retained_intron
  ENSMUST00000144741 Srp72-009 76997405-76998341 retained_intron
  ENSMUST00000146167 Srp72-008 76995257-76997489 retained_intron
  ENSMUST00000148423 Srp72-006 76980579-76982714 retained_intron
  ENSMUST00000150661 Srp72-005 76974721-76980590 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101087ENSMUST00000120550ENSMUST00000132860ENSMUST00000150661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101087 15.143±1.50 9.085±1.72 23.791±1.83 17.205±7.34 11.032±1.02 10.143±1.35 7.794±0.60 11.767±0.60 20.530±5.48 11.143±2.52 10.321±0.54 18.099±8.33 26.478±13.92 17.642±6.19
ENSMUST00000120550 N/A N/A N/A 14.936±0.00 N/A N/A N/A N/A N/A N/A N/A 25.598±0.00 26.763±10.03 23.880±0.00
ENSMUST00000132860 4.354±0.00 3.038±0.58 N/A N/A N/A 3.679±0.08 N/A N/A N/A N/A N/A 5.493±1.05 N/A N/A
ENSMUST00000150661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.358±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0001WO CIL_0001WO_0002 CGP 5:76951307-76999937
CIL_0001WL CIL_0001WL_0002 CGP 5:76974683-77010606

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005047 IEA signal recognition particle binding
GO:0005783 IEA endoplasmic reticulum
GO:0005786 ISA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 ISA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014139 srp72 signal recognition particle 72 protein_coding Danio_rerio
ENSG00000174780 SRP72 signal recognition particle 72kDa protein_coding Homo_sapiens

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