C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 72
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101087 Srp72-001 ENSMUSG00000036323 10090 + 5:76974683-76999937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101087 15.143±1.50 9.085±1.72 23.791±1.83 17.205±7.34 11.032±1.02 10.143±1.35 7.794±0.60 11.767±0.60 20.530±5.48 11.143±2.52 10.321±0.54 18.099±8.33 26.478±13.92 17.642±6.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0001WO CIL_0001WO_0002 CGP 5:76951307-76999937
CIL_0001WL CIL_0001WL_0002 CGP 5:76974683-77010606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IEA signal recognition particle binding
GO:0005783 IEA endoplasmic reticulum
GO:0005786 ISA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 ISA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342756 SRP72-001 protein_coding Homo_sapiens 0 2706
ENST00000344851 SRP72P2-001 processed_pseudogene Homo_sapiens 0 1962
ENST00000504757 SRP72-008 protein_coding Homo_sapiens 0 830
ENST00000505314 SRP72-002 protein_coding Homo_sapiens 0 869
ENST00000507126 SRP72-004 retained_intron Homo_sapiens 0 568
ENST00000510663 SRP72-005 protein_coding Homo_sapiens 0 1657
ENST00000580060 SRP72P1-001 processed_pseudogene Homo_sapiens 0 1707

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