C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001WO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128050-ENSG00000174780 CGP 9606 4:56435741-56503680
GeneTranscriptPositionBiotype
ENSG00000128050 (PAICS)
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 		ENST00000264221 (PAICS-201) 56435749-56461368 protein_coding
ENST00000399688 (PAICS-003) 56436138-56461361 protein_coding
ENST00000504188 (PAICS-009) 56436039-56441863 retained_intron
ENST00000505164 (PAICS-001) 56435752-56459499 protein_coding
ENST00000508554 (PAICS-010) 56448699-56451191 retained_intron
ENST00000510584 (PAICS-008) 56436138-56442028 retained_intron
ENST00000512576 (PAICS-006) 56436152-56459664 protein_coding
ENST00000514888 (PAICS-002) 56435741-56461361 protein_coding
ENSG00000174780 (SRP72)
signal recognition particle 72kDa 		ENST00000342756 (SRP72-001) 56466915-56503107 protein_coding
ENST00000504757 (SRP72-008) 56467618-56474508 protein_coding
ENST00000505314 (SRP72-002) 56474134-56491565 protein_coding
ENST00000507126 (SRP72-004) 56500512-56503680 retained_intron
ENST00000510663 (SRP72-005) 56467617-56502482 protein_coding
ENSG00000270109 (LINC01240)
long intergenic non-protein coding RNA 1240 		ENST00000602434 (LINC01240-001) 56464158-56464579 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001WO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029247-ENSMUSG00000036323 CGP 10090 5:76951307-76999937
GeneTranscriptPositionBiotype
ENSMUSG00000029246 (Ppat)
phosphoribosyl pyrophosphate amidotransferase 		ENSMUST00000031158 (Ppat-003) 76915044-76951165 retained_intron
ENSMUST00000140076 (Ppat-001) 76913276-76951578 protein_coding
ENSMUST00000155272 (Ppat-002) 76913249-76951572 nonsense_mediated_decay
ENSMUSG00000029247 (Paics)
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 		ENSMUST00000031160 (Paics-003) 76951307-76967505 protein_coding
ENSMUST00000117536 (Paics-002) 76951368-76967313 protein_coding
ENSMUST00000120912 (Paics-001) 76951348-76967509 protein_coding
ENSMUST00000140051 (Paics-006) 76961476-76962970 retained_intron
ENSMUST00000141687 (Paics-004) 76951382-76959350 protein_coding
ENSMUST00000153648 (Paics-005) 76951777-76962479 nonsense_mediated_decay
ENSMUST00000154688 (Paics-007) 76966157-76966841 retained_intron
ENSMUSG00000036323 (Srp72)
signal recognition particle 72 		ENSMUST00000101087 (Srp72-001) 76974683-76999937 protein_coding
ENSMUST00000120550 (Srp72-002) 76974707-76998816 protein_coding
ENSMUST00000125732 (Srp72-007) 76993993-76994903 retained_intron
ENSMUST00000132860 (Srp72-004) 76996974-76999937 retained_intron
ENSMUST00000141873 (Srp72-003) 76984095-76995146 retained_intron
ENSMUST00000144741 (Srp72-009) 76997405-76998341 retained_intron
ENSMUST00000146167 (Srp72-008) 76995257-76997489 retained_intron
ENSMUST00000148423 (Srp72-006) 76980579-76982714 retained_intron
ENSMUST00000150661 (Srp72-005) 76974721-76980590 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WO_0001ENSG00000128050ENST00000264221ENST00000399688ENST00000504188ENST00000505164ENST00000508554ENST00000510584ENST00000512576ENST00000514888ENSG00000174780ENST00000342756ENST00000504757ENST00000505314ENST00000507126ENST00000510663ENSG00000270109ENST00000602434CIL_0001WO_0002ENSMUSG00000029246ENSMUST00000031158ENSMUST00000140076ENSMUST00000155272ENSMUSG00000029247ENSMUST00000031160ENSMUST00000117536ENSMUST00000120912ENSMUST00000140051ENSMUST00000141687ENSMUST00000153648ENSMUST00000154688ENSMUSG00000036323ENSMUST00000101087ENSMUST00000120550ENSMUST00000125732ENSMUST00000132860ENSMUST00000141873ENSMUST00000144741ENSMUST00000146167ENSMUST00000148423ENSMUST00000150661
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WO_0001ENSG00000128050ENST00000264221ENST00000399688ENST00000505164ENST00000512576ENST00000514888ENSG00000174780ENST00000342756ENST00000504757ENST00000505314ENST00000507126ENST00000510663ENSG00000270109ENST00000602434CIL_0001WO_0002ENSMUSG00000029246ENSMUST00000031158ENSMUST00000140076ENSMUSG00000029247ENSMUST00000031160ENSMUST00000117536ENSMUST00000120912ENSMUST00000154688ENSMUSG00000036323ENSMUST00000101087ENSMUST00000120550ENSMUST00000132860ENSMUST00000150661
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128050 ENST00000264221 1.408±0.00 N/A 1.849±0.00 6.054±0.00 N/A 4.734±0.00 0.225±0.00 N/A 6.449±6.07 N/A N/A 6.356±0.94 8.934±3.66 3.159±0.00
ENST00000399688 4.026±0.00 6.138±0.00 N/A 6.675±0.00 6.203±0.00 3.156±0.00 1.818±0.00 9.978±0.00 5.290±0.00 N/A N/A 11.433±8.45 5.228±2.22 10.832±1.64
ENST00000504188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505164 N/A N/A N/A N/A N/A N/A N/A N/A 1.839±0.00 N/A N/A 22.913±0.00 17.159±0.00 10.117±0.00
ENST00000508554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512576 3.296±0.00 N/A N/A N/A 2.958±0.16 4.814±0.28 0.967±0.00 N/A N/A 1.971±0.00 2.181±0.48 6.714±1.39 N/A 3.663±0.00
ENST00000514888 N/A N/A 1.730±0.00 5.741±0.00 N/A 5.417±0.00 2.873±0.00 6.476±0.00 0.383±0.00 N/A N/A 8.033±5.63 4.962±0.22 N/A
ENSG00000174780 ENST00000342756 5.488±0.00 7.374±0.00 2.590±0.00 6.692±1.37 4.502±0.07 6.254±1.88 1.546±0.69 3.673±0.83 5.000±0.55 5.790±1.50 1.364±0.56 9.698±3.47 8.682±2.83 11.196±4.75
ENST00000504757 N/A N/A N/A N/A N/A N/A 1.847±0.00 N/A 6.075±0.00 N/A 1.115±0.00 N/A N/A N/A
ENST00000505314 N/A N/A N/A N/A N/A N/A N/A 6.923±0.00 N/A 8.733±0.00 2.156±0.88 N/A N/A N/A
ENST00000507126 3.252±0.00 6.812±0.00 N/A 5.463±0.00 4.781±0.00 4.241±0.00 2.220±0.00 8.239±0.00 4.552±0.00 5.258±0.00 1.958±0.00 7.517±0.47 6.714±0.27 5.776±0.00
ENST00000510663 12.368±0.00 7.143±0.00 N/A 10.688±0.00 5.487±1.57 8.102±0.00 3.090±2.12 4.172±1.58 6.162±0.00 8.311±0.00 2.344±2.08 6.430±2.27 7.917±1.66 10.963±0.00
ENSG00000270109 ENST00000602434 0.139±0.00 0.728±0.00 0.952±0.00 0.552±0.16 0.426±0.00 0.825±0.75 0.042±0.00 0.063±0.00 0.579±0.26 0.136±0.00 N/A 0.389±0.17 0.082±0.01 0.205±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029246 ENSMUST00000031158 N/A N/A N/A 9.373±0.00 N/A N/A N/A N/A N/A N/A N/A 18.076±0.00 16.672±11.41 4.674±0.00
ENSMUST00000140076 4.819±0.10 N/A 4.428±0.25 3.740±0.68 3.370±0.49 3.130±0.70 3.567±0.15 8.493±1.02 13.174±3.73 3.894±0.37 5.891±0.72 7.568±1.44 7.487±3.64 2.398±0.26
ENSMUST00000155272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029247 ENSMUST00000031160 11.481±2.13 16.408±2.41 11.643±2.44 13.154±4.09 7.037±2.12 5.342±0.68 10.241±2.76 8.347±0.00 14.522±5.30 4.115±0.44 13.387±2.19 7.300±1.02 12.311±4.04 3.966±0.33
ENSMUST00000117536 14.425±6.69 14.310±0.43 13.847±2.31 19.148±12.99 13.907±2.04 11.724±4.02 16.442±2.12 46.643±4.77 44.214±25.60 18.363±2.75 11.661±1.51 26.664±17.79 33.207±16.44 12.525±8.48
ENSMUST00000120912 8.069±0.62 N/A 17.340±0.46 12.212±2.79 5.062±0.00 N/A 32.006±0.00 N/A 34.471±6.96 12.912±0.00 9.023±2.97 29.045±9.94 20.656±9.35 7.291±1.58
ENSMUST00000140051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154688 N/A 41.141±5.75 N/A N/A N/A 17.322±2.02 N/A N/A N/A N/A N/A 31.314±4.97 N/A N/A
ENSMUSG00000036323 ENSMUST00000101087 15.143±1.50 9.085±1.72 23.791±1.83 17.205±7.34 11.032±1.02 10.143±1.35 7.794±0.60 11.767±0.60 20.530±5.48 11.143±2.52 10.321±0.54 18.099±8.33 26.478±13.92 17.642±6.19
ENSMUST00000120550 N/A N/A N/A 14.936±0.00 N/A N/A N/A N/A N/A N/A N/A 25.598±0.00 26.763±10.03 23.880±0.00
ENSMUST00000125732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132860 4.354±0.00 3.038±0.58 N/A N/A N/A 3.679±0.08 N/A N/A N/A N/A N/A 5.493±1.05 N/A N/A
ENSMUST00000141873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.358±0.25

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