C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 72
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120550 Srp72-002 ENSMUSG00000036323 10090 + 5:76974707-76998816 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000120550
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000120550 14.936±0.00 25.598±0.00 26.763±10.03 23.880±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0001WO CIL_0001WO_0002 CGP 5:76951307-76999937
CIL_0001WL CIL_0001WL_0002 CGP 5:76974683-77010606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005786 ISA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 ISA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342756 SRP72-001 protein_coding Homo_sapiens 0 1657
ENST00000344851 SRP72P2-001 processed_pseudogene Homo_sapiens 0 1210
ENST00000504757 SRP72-008 protein_coding Homo_sapiens 0 830
ENST00000505314 SRP72-002 protein_coding Homo_sapiens 0 869
ENST00000507126 SRP72-004 retained_intron Homo_sapiens 0 568
ENST00000510663 SRP72-005 protein_coding Homo_sapiens 0 2518
ENST00000580060 SRP72P1-001 processed_pseudogene Homo_sapiens 0 1194

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