C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 18 (vesicular monoamine), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037478 Slc18a1-001 ENSMUSG00000036330 10090 - 8:69037711-69089222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037478 0.296±0.07 11.132±3.60 0.348±0.04 0.078±0.05 0.399±0.22 1.850±0.96 0.084±0.00 67.325±6.02 0.986±0.53 0.962±0.28 0.077±0.03 0.301±0.15 1.894±1.57 0.270±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TS CIL_0003TS_0002 CGP 8:68880491-69089235
CIL_0003TP CIL_0003TP_0002 CGP 8:69037711-69113711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006836 IEA neurotransmitter transport
GO:0006855 IEA drug transmembrane transport
GO:0015238 IEA drug transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265808 SLC18A1-002 protein_coding Homo_sapiens 0 815
ENST00000276373 SLC18A1-001 protein_coding Homo_sapiens 0 1489
ENST00000381608 SLC18A1-008 protein_coding Homo_sapiens 0 1314
ENST00000437980 SLC18A1-201 protein_coding Homo_sapiens 0 1314
ENST00000440926 SLC18A1-202 protein_coding Homo_sapiens 0 1489
ENST00000517776 SLC18A1-004 nonsense_mediated_decay Homo_sapiens 0 1068
ENST00000519026 SLC18A1-003 protein_coding Homo_sapiens 0 815
ENST00000519171 SLC18A1-007 retained_intron Homo_sapiens 7e-38 161
ENST00000524272 SLC18A1-006 processed_transcript Homo_sapiens 0 350

Loading