C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 53, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045329 Fam53a-002 ENSMUSG00000037339 10090 - 5:33600356-33629622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000045329
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000045329 3.501±0.04 4.028±0.37 2.018±0.14 2.940±1.57 4.506±1.62 2.885±0.54 1.400±0.05 1.379±0.13 2.162±0.96 3.135±0.41 9.906±2.67 3.352±2.01 2.328±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LY CIL_0006LY_0002 CGP 5:33430734-33629635
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISO nucleus
GO:0006606 ISO protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308132 FAM53A-201 protein_coding Homo_sapiens 1e-36 159
ENST00000461064 FAM53A-002 protein_coding Homo_sapiens 8e-27 126
ENST00000489363 FAM53A-001 protein_coding Homo_sapiens 1e-36 159

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