C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182226 Ppfia1-002 ENSMUSG00000037519 10090 - 7:144476978-144552537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENSMUST00000182226
Transcript ID Brain Muscle Ovary
ENSMUST00000182226 9.024±0.00 1.029±0.10 8.196±5.99

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone
GO:0051497 IDA negative regulation of stress fiber assembly
GO:0090005 IEA negative regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253925 PPFIA1-001 protein_coding Homo_sapiens 0 1264
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 230
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 230
ENST00000389547 PPFIA1-002 protein_coding Homo_sapiens 0 1264
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 230
ENST00000525530 PPFIA1-011 retained_intron Homo_sapiens 0 276
ENST00000525922 PPFIA1-025 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000526074 PPFIA1-020 processed_transcript Homo_sapiens 0 292
ENST00000526262 PPFIA1-004 nonsense_mediated_decay Homo_sapiens 0 3391
ENST00000526347 PPFIA1-016 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000526369 PPFIA1-014 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000527612 PPFIA1-022 retained_intron Homo_sapiens 0 514
ENST00000528750 PPFIA1-018 protein_coding Homo_sapiens 0 747
ENST00000528853 PPFIA1-023 protein_coding Homo_sapiens 0 429
ENST00000530294 PPFIA1-017 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000530390 PPFIA1-021 nonsense_mediated_decay Homo_sapiens 0 780
ENST00000530548 PPFIA1-006 processed_transcript Homo_sapiens 0 998
ENST00000530746 PPFIA1-008 protein_coding Homo_sapiens 0 510
ENST00000530798 PPFIA1-013 protein_coding Homo_sapiens 0 372
ENST00000530932 PPFIA1-010 processed_transcript Homo_sapiens 0 337
ENST00000531657 PPFIA1-007 retained_intron Homo_sapiens 0 957
ENST00000532024 PPFIA1-009 protein_coding Homo_sapiens 0 355
ENST00000532504 PPFIA1-003 nonsense_mediated_decay Homo_sapiens 0 1626
ENST00000533894 PPFIA1-019 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 230
ENST00000601609 PPFIA4-013 retained_intron Homo_sapiens 0 228

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