C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182958 Ppfia1-004 ENSMUSG00000037519 10090 - 7:144476766-144513274 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182958
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182958 10.128±1.04 19.590±1.44 3.672±0.00 7.276±1.27 12.878±5.00 12.636±1.18 3.924±1.50 13.179±2.36 5.979±2.57 15.118±1.86 1.274±0.00 18.780±6.85 6.485±2.44 5.375±0.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253925 PPFIA1-001 protein_coding Homo_sapiens 0 2440
ENST00000389547 PPFIA1-002 protein_coding Homo_sapiens 0 2324
ENST00000525922 PPFIA1-025 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000526074 PPFIA1-020 processed_transcript Homo_sapiens 0 551
ENST00000526262 PPFIA1-004 nonsense_mediated_decay Homo_sapiens 0 929
ENST00000526347 PPFIA1-016 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000526369 PPFIA1-014 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000527612 PPFIA1-022 retained_intron Homo_sapiens 0 512
ENST00000528750 PPFIA1-018 protein_coding Homo_sapiens 0 747
ENST00000528853 PPFIA1-023 protein_coding Homo_sapiens 0 429
ENST00000530294 PPFIA1-017 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000530390 PPFIA1-021 nonsense_mediated_decay Homo_sapiens 0 749
ENST00000530548 PPFIA1-006 processed_transcript Homo_sapiens 0 929
ENST00000530798 PPFIA1-013 protein_coding Homo_sapiens 0 372
ENST00000531657 PPFIA1-007 retained_intron Homo_sapiens 0 929
ENST00000532504 PPFIA1-003 nonsense_mediated_decay Homo_sapiens 0 1688
ENST00000533894 PPFIA1-019 nonsense_mediated_decay Homo_sapiens 0 531

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