C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat and HMG-box DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037572 Wdhd1 10090 - 14:47240944-47276857 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111790 Wdhd1-002 47257679-47276832 protein_coding
  ENSMUST00000111791 Wdhd1-001 47240944-47276832 protein_coding
  ENSMUST00000111792 Wdhd1-004 47240944-47276790 protein_coding
  ENSMUST00000139124 Wdhd1-003 47272469-47276807 retained_intron
  ENSMUST00000187531 Wdhd1-201 47240945-47276857 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111790ENSMUST00000111791ENSMUST00000111792ENSMUST00000139124ENSMUST00000187531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111790 N/A 0.267±0.08 N/A N/A N/A 0.343±0.00 0.065±0.03 N/A 0.054±0.01 N/A 0.039±0.00 N/A N/A N/A
ENSMUST00000111791 N/A N/A N/A N/A N/A 1.212±0.72 N/A 0.172±0.00 0.293±0.00 N/A 0.128±0.00 0.475±0.00 N/A N/A
ENSMUST00000111792 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.156±0.05 N/A 0.149±0.02 N/A 0.191±0.00 N/A
ENSMUST00000139124 0.221±0.00 N/A N/A N/A 0.458±0.00 N/A N/A 0.057±0.00 0.041±0.01 N/A N/A N/A N/A N/A
ENSMUST00000187531 0.558±0.06 0.315±0.12 0.973±0.18 3.298±1.84 0.986±0.23 1.531±0.31 0.143±0.02 0.226±0.05 11.611±8.65 0.448±0.17 0.201±0.03 1.960±0.72 6.369±4.95 2.573±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000005 CIL_000005_0003 CGP 14:47153895-47276857
CIL_000603 CIL_000603_0003 CGP 14:47240944-47296098

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006396 IMP RNA processing
GO:0033044 IMP regulation of chromosome organization
GO:0070063 IDA RNA polymerase binding
GO:0070829 IMP heterochromatin maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015998 wdhd1 WD repeat and HMG-box DNA binding protein 1 protein_coding Danio_rerio
ENSG00000198554 WDHD1 WD repeat and HMG-box DNA binding protein 1 protein_coding Homo_sapiens

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