C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat and HMG-box DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198554 WDHD1 9606 - 14:54938950-55027105 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360586 WDHD1-001 54938950-55027077 protein_coding
  ENST00000420358 WDHD1-002 54941159-55027105 protein_coding
  ENST00000455555 WDHD1-003 55008316-55027051 protein_coding
  ENST00000475379 WDHD1-004 54941271-54944607 retained_intron
  ENST00000567693 WDHD1-005 54941176-54991382 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360586ENST00000420358ENST00000455555ENST00000475379ENST00000567693
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360586 0.303±0.00 0.105±0.00 0.319±0.00 N/A 0.395±0.00 N/A N/A N/A 0.541±0.00 N/A 1.341±0.87 0.356±0.11 0.543±0.34
ENST00000420358 N/A 0.167±0.00 0.663±0.00 0.306±0.14 0.634±0.00 0.159±0.03 0.216±0.01 N/A 0.259±0.00 0.162±0.00 1.229±0.79 0.521±0.29 0.865±0.00
ENST00000455555 N/A N/A N/A N/A N/A N/A N/A 0.631±0.00 N/A N/A N/A N/A N/A
ENST00000475379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.826±0.00 1.470±0.00 4.206±0.00
ENST00000567693 0.470±0.00 0.188±0.00 0.316±0.00 0.253±0.00 0.608±0.00 N/A 0.131±0.00 0.039±0.00 0.227±0.00 0.175±0.00 2.713±1.88 1.034±0.84 2.148±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000005 CIL_000005_0002 CGP 14:54842008-55027105
CIL_000603 CIL_000603_0002 CGP 14:54938950-55049488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0006396 IEA RNA processing
GO:0033044 IEA regulation of chromosome organization
GO:0070063 IEA RNA polymerase binding
GO:0070829 IEA heterochromatin maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015998 wdhd1 WD repeat and HMG-box DNA binding protein 1 protein_coding Danio_rerio
ENSMUSG00000037572 Wdhd1 WD repeat and HMG-box DNA binding protein 1 protein_coding Mus_musculus

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