C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat and HMG-box DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111791 Wdhd1-001 ENSMUSG00000037572 10090 - 14:47240944-47276832 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverMuscleOvaryENSMUST00000111791
Transcript ID Colon Kidney Liver Muscle Ovary
ENSMUST00000111791 1.212±0.72 0.172±0.00 0.293±0.00 0.128±0.00 0.475±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000005 CIL_000005_0003 CGP 14:47153895-47276857
CIL_000603 CIL_000603_0003 CGP 14:47240944-47296098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006396 IMP RNA processing
GO:0033044 IMP regulation of chromosome organization
GO:0070063 IDA RNA polymerase binding
GO:0070829 IMP heterochromatin maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360586 WDHD1-001 protein_coding Homo_sapiens 0 3374
ENST00000420358 WDHD1-002 protein_coding Homo_sapiens 0 3306
ENST00000455555 WDHD1-003 protein_coding Homo_sapiens 0 608
ENST00000567693 WDHD1-005 nonsense_mediated_decay Homo_sapiens 0 1827

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