C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000005_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070453-ENSDARG00000015998 CGP 7955 17:14963216-15030636
GeneTranscriptPositionBiotype
ENSDARG00000015998 (wdhd1)
WD repeat and HMG-box DNA binding protein 1 		ENSDART00000002176 (wdhd1-201) 14991265-15030624 protein_coding
ENSDART00000110507 (wdhd1-202) 14991018-15027618 protein_coding
ENSDART00000133710 (wdhd1-001) 14991182-15030636 protein_coding
ENSDART00000138764 (wdhd1-004) 14991264-15030624 nonsense_mediated_decay
ENSDART00000151885 (wdhd1-002) 15025136-15029679 protein_coding
ENSDARG00000070453 (gch1)
GTP cyclohydrolase 1 		ENSDART00000103405 (gch1-001) 14963920-14990514 protein_coding
ENSDART00000148725 (gch1-002) 14963216-14972676 nonsense_mediated_decay

Danio rerio Ensembl (Zv9)

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CIL_000005_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131979-ENSG00000198554 CGP 9606 14:54842008-55027105
GeneTranscriptPositionBiotype
ENSG00000131979 (GCH1)
GTP cyclohydrolase 1 		ENST00000254299 (GCH1-001) 54842017-54902811 processed_transcript
ENST00000395514 (GCH1-201) 54842008-54902824 protein_coding
ENST00000395521 (GCH1-005) 54842996-54902446 processed_transcript
ENST00000491895 (GCH1-002) 54842016-54902852 protein_coding
ENST00000536224 (GCH1-004) 54842029-54902816 protein_coding
ENST00000543643 (GCH1-003) 54842016-54902807 protein_coding
ENST00000622544 (GCH1-202) 54842008-54902824 protein_coding
ENSG00000198554 (WDHD1)
WD repeat and HMG-box DNA binding protein 1 		ENST00000360586 (WDHD1-001) 54938950-55027077 protein_coding
ENST00000420358 (WDHD1-002) 54941159-55027105 protein_coding
ENST00000455555 (WDHD1-003) 55008316-55027051 protein_coding
ENST00000475379 (WDHD1-004) 54941271-54944607 retained_intron
ENST00000567693 (WDHD1-005) 54941176-54991382 nonsense_mediated_decay
ENSG00000233924 (AL160471.6)
 ENST00000415189 (AL160471.6-001) 55004813-55005687 processed_pseudogene
ENSG00000252019 (RNU6ATAC9P)
RNA, U6atac small nuclear 9, pseudogene 		ENST00000516210 (RNU6ATAC9P-201) 54859215-54859330 snRNA
ENSG00000258872 (FDPSP3)
farnesyl diphosphate synthase pseudogene 3 		ENST00000556903 (FDPSP3-001) 54884849-54886213 transcribed_processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000005_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037580-ENSMUSG00000037572 CGP 10090 14:47153895-47276857
GeneTranscriptPositionBiotype
ENSMUSG00000037572 (Wdhd1)
WD repeat and HMG-box DNA binding protein 1 		ENSMUST00000111790 (Wdhd1-002) 47257679-47276832 protein_coding
ENSMUST00000111791 (Wdhd1-001) 47240944-47276832 protein_coding
ENSMUST00000111792 (Wdhd1-004) 47240944-47276790 protein_coding
ENSMUST00000139124 (Wdhd1-003) 47272469-47276807 retained_intron
ENSMUST00000187531 (Wdhd1-201) 47240945-47276857 protein_coding
ENSMUSG00000037580 (Gch1)
GTP cyclohydrolase 1 		ENSMUST00000089959 (Gch1-201) 47153895-47189413 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000005_0001ENSDARG00000015998ENSDART00000002176ENSDART00000110507ENSDART00000133710ENSDART00000138764ENSDART00000151885ENSDARG00000070453ENSDART00000103405ENSDART00000148725CIL_000005_0002ENSG00000131979ENST00000254299ENST00000395514ENST00000395521ENST00000491895ENST00000536224ENST00000543643ENST00000622544ENSG00000198554ENST00000360586ENST00000420358ENST00000455555ENST00000475379ENST00000567693ENSG00000233924ENST00000415189ENSG00000252019ENST00000516210ENSG00000258872ENST00000556903CIL_000005_0003ENSMUSG00000037572ENSMUST00000111790ENSMUST00000111791ENSMUST00000111792ENSMUST00000139124ENSMUST00000187531ENSMUSG00000037580ENSMUST00000089959
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000005_0001ENSDARG00000015998ENSDART00000002176ENSDART00000110507ENSDART00000133710ENSDART00000138764ENSDART00000151885ENSDARG00000070453ENSDART00000103405ENSDART00000148725CIL_000005_0002ENSG00000131979ENST00000254299ENST00000395514ENST00000395521ENST00000491895ENST00000536224ENST00000622544ENSG00000198554ENST00000360586ENST00000420358ENST00000455555ENST00000475379ENST00000567693ENSG00000233924ENST00000415189ENSG00000252019ENST00000516210ENSG00000258872ENST00000556903CIL_000005_0003ENSMUSG00000037572ENSMUST00000111790ENSMUST00000111791ENSMUST00000111792ENSMUST00000139124ENSMUST00000187531ENSMUSG00000037580ENSMUST00000089959
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015998 ENSDART00000002176 N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A 0.109±0.00 N/A N/A N/A
ENSDART00000110507 N/A N/A N/A 0.125±0.03 N/A N/A 0.304±0.15 1.676±0.00 N/A N/A 0.064±0.00 N/A N/A N/A
ENSDART00000133710 N/A N/A N/A 0.366±0.00 N/A N/A N/A 4.098±0.00 0.346±0.00 N/A N/A N/A N/A N/A
ENSDART00000138764 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.090±0.00 N/A N/A N/A
ENSDART00000151885 N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070453 ENSDART00000103405 N/A N/A N/A 2.517±0.74 N/A N/A 1.111±0.64 5.342±0.95 1.046±0.00 N/A 0.297±0.00 N/A N/A N/A
ENSDART00000148725 N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131979 ENST00000254299 1.725±0.00 N/A 1.475±0.00 0.158±0.00 N/A 1.134±0.35 0.418±0.27 3.380±2.13 14.074±0.00 1.941±0.00 0.123±0.00 2.046±1.15 1.212±0.38 1.539±0.00
ENST00000395514 N/A N/A N/A N/A N/A 1.799±0.00 0.274±0.00 2.115±0.00 5.674±5.52 7.574±0.00 0.166±0.00 N/A 0.543±0.03 1.672±0.00
ENST00000395521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A N/A
ENST00000491895 N/A 1.232±0.00 N/A N/A N/A N/A N/A N/A N/A 7.780±0.00 N/A N/A 0.779±0.00 N/A
ENST00000536224 N/A N/A N/A 0.065±0.00 N/A N/A N/A 5.893±0.00 N/A N/A 1.224±0.00 0.843±0.32 1.292±0.00 N/A
ENST00000543643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622544 N/A 1.518±0.00 N/A 0.911±0.00 1.605±0.58 N/A N/A 2.760±0.00 N/A N/A N/A N/A N/A 1.820±0.00
ENSG00000198554 ENST00000360586 0.303±0.00 0.105±0.00 N/A 0.319±0.00 N/A 0.395±0.00 N/A N/A N/A 0.541±0.00 N/A 1.341±0.87 0.356±0.11 0.543±0.34
ENST00000420358 N/A 0.167±0.00 N/A 0.663±0.00 0.306±0.14 0.634±0.00 0.159±0.03 0.216±0.01 N/A 0.259±0.00 0.162±0.00 1.229±0.79 0.521±0.29 0.865±0.00
ENST00000455555 N/A N/A N/A N/A N/A N/A N/A N/A 0.631±0.00 N/A N/A N/A N/A N/A
ENST00000475379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.826±0.00 1.470±0.00 4.206±0.00
ENST00000567693 0.470±0.00 0.188±0.00 N/A 0.316±0.00 0.253±0.00 0.608±0.00 N/A 0.131±0.00 0.039±0.00 0.227±0.00 0.175±0.00 2.713±1.88 1.034±0.84 2.148±0.65
ENSG00000233924 ENST00000415189 N/A N/A N/A N/A 0.130±0.00 0.538±0.00 0.032±0.00 N/A N/A N/A 0.015±0.00 0.842±0.00 0.048±0.00 N/A
ENSG00000252019 ENST00000516210 N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A N/A N/A 0.181±0.00
ENSG00000258872 ENST00000556903 N/A 0.194±0.00 0.057±0.00 0.016±0.00 0.342±0.00 0.411±0.40 0.056±0.00 0.138±0.12 0.206±0.18 0.565±0.00 N/A 0.050±0.01 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037572 ENSMUST00000111790 N/A 0.267±0.08 N/A N/A N/A 0.343±0.00 0.065±0.03 N/A 0.054±0.01 N/A 0.039±0.00 N/A N/A N/A
ENSMUST00000111791 N/A N/A N/A N/A N/A 1.212±0.72 N/A 0.172±0.00 0.293±0.00 N/A 0.128±0.00 0.475±0.00 N/A N/A
ENSMUST00000111792 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.156±0.05 N/A 0.149±0.02 N/A 0.191±0.00 N/A
ENSMUST00000139124 0.221±0.00 N/A N/A N/A 0.458±0.00 N/A N/A 0.057±0.00 0.041±0.01 N/A N/A N/A N/A N/A
ENSMUST00000187531 0.558±0.06 0.315±0.12 0.973±0.18 3.298±1.84 0.986±0.23 1.531±0.31 0.143±0.02 0.226±0.05 11.611±8.65 0.448±0.17 0.201±0.03 1.960±0.72 6.369±4.95 2.573±0.22
ENSMUSG00000037580 ENSMUST00000089959 2.219±0.23 67.932±6.73 2.219±0.60 0.804±0.51 3.527±1.33 9.121±3.83 2.752±0.23 1.267±0.20 37.149±34.53 7.295±1.93 0.558±0.08 18.241±8.62 2.623±1.47 0.295±0.20

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