C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: latrophilin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037605 Lphn3 10090 + 5:81020138-81825133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036068 Lphn3-201 81310025-81796634 protein_coding
  ENSMUST00000072521 Lphn3-202 81310025-81796634 protein_coding
  ENSMUST00000117253 Lphn3-006 81021202-81792978 protein_coding
  ENSMUST00000117407 Lphn3-005 81309912-81795887 protein_coding
  ENSMUST00000117985 Lphn3-019 81309874-81795347 protein_coding
  ENSMUST00000118034 Lphn3-015 81309874-81795347 protein_coding
  ENSMUST00000118078 Lphn3-011 81309873-81795347 protein_coding
  ENSMUST00000118442 Lphn3-016 81309874-81795347 protein_coding
  ENSMUST00000119385 Lphn3-008 81309912-81795216 protein_coding
  ENSMUST00000119788 Lphn3-010 81309937-81795716 protein_coding
  ENSMUST00000120128 Lphn3-007 81021240-81796645 protein_coding
  ENSMUST00000120144 Lphn3-012 81309874-81795347 protein_coding
  ENSMUST00000120292 Lphn3-020 81309874-81795347 protein_coding
  ENSMUST00000120445 Lphn3-013 81309874-81795347 protein_coding
  ENSMUST00000120673 Lphn3-014 81309874-81795347 protein_coding
  ENSMUST00000121641 Lphn3-017 81309874-81795347 protein_coding
  ENSMUST00000121707 Lphn3-001 81021593-81796635 protein_coding
  ENSMUST00000122037 Lphn3-023 81309912-81795216 protein_coding
  ENSMUST00000122356 Lphn3-009 81309912-81795216 protein_coding
  ENSMUST00000124117 Lphn3-018 81660303-81796634 protein_coding
  ENSMUST00000126227 Lphn3-031 81645989-81688522 processed_transcript
  ENSMUST00000127046 Lphn3-024 81021810-81561051 retained_intron
  ENSMUST00000132375 Lphn3-002 81020571-81796634 nonsense_mediated_decay
  ENSMUST00000132634 Lphn3-028 81021791-81197587 processed_transcript
  ENSMUST00000134597 Lphn3-030 81309882-81346367 processed_transcript
  ENSMUST00000136104 Lphn3-021 81020755-81688740 retained_intron
  ENSMUST00000140356 Lphn3-025 81021199-81467610 retained_intron
  ENSMUST00000147226 Lphn3-026 81020138-81388784 retained_intron
  ENSMUST00000148830 Lphn3-004 81771658-81825133 processed_transcript
  ENSMUST00000148923 Lphn3-027 81020996-81067954 retained_intron
  ENSMUST00000149280 Lphn3-022 81020752-81688743 retained_intron
  ENSMUST00000153264 Lphn3-029 81021792-81796634 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036068ENSMUST00000072521ENSMUST00000117407ENSMUST00000118034ENSMUST00000118078ENSMUST00000118442ENSMUST00000119385ENSMUST00000120128ENSMUST00000121641ENSMUST00000122037ENSMUST00000122356ENSMUST00000124117ENSMUST00000126227ENSMUST00000127046ENSMUST00000132375ENSMUST00000134597ENSMUST00000136104ENSMUST00000147226ENSMUST00000149280ENSMUST00000153264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A
ENSMUST00000072521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A
ENSMUST00000117407 N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000118034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.777±0.00
ENSMUST00000118078 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A
ENSMUST00000118442 N/A N/A N/A 4.193±0.00 0.267±0.00 N/A 0.218±0.00 N/A 0.026±0.00 N/A 0.018±0.00 N/A 0.049±0.00 N/A
ENSMUST00000119385 N/A 0.339±0.07 N/A 15.932±10.29 0.270±0.00 N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000120128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUST00000121641 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000122037 0.182±0.00 0.590±0.15 0.310±0.00 14.954±0.00 0.416±0.00 0.473±0.04 0.091±0.00 0.115±0.03 0.129±0.01 N/A 0.028±0.01 1.479±0.58 0.162±0.08 1.295±0.15
ENSMUST00000122356 1.702±1.33 0.350±0.17 0.593±0.28 N/A 0.861±0.11 0.907±0.24 0.185±0.08 0.248±0.10 0.092±0.04 10.004±3.89 N/A 4.528±1.61 0.155±0.08 N/A
ENSMUST00000124117 1.299±0.00 N/A 0.814±0.05 5.956±0.00 0.800±0.00 0.319±0.00 0.085±0.00 0.124±0.04 0.111±0.08 N/A 0.036±0.01 1.438±0.26 0.101±0.04 1.583±0.56
ENSMUST00000126227 N/A N/A N/A N/A N/A N/A N/A 0.386±0.00 N/A N/A 0.089±0.00 N/A N/A N/A
ENSMUST00000127046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.229±0.00 N/A
ENSMUST00000132375 N/A N/A N/A 4.477±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134597 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.05 N/A 0.044±0.00 N/A N/A N/A
ENSMUST00000136104 N/A N/A 0.384±0.00 N/A 0.298±0.00 N/A N/A N/A N/A N/A N/A 1.047±0.19 0.072±0.02 N/A
ENSMUST00000147226 N/A 0.397±0.04 N/A N/A 0.362±0.00 N/A 0.124±0.00 N/A 0.053±0.03 N/A N/A 2.377±0.32 N/A N/A
ENSMUST00000149280 0.205±0.00 N/A 0.788±0.00 N/A N/A N/A 0.147±0.01 0.178±0.00 0.110±0.05 N/A N/A 2.561±0.00 N/A N/A
ENSMUST00000153264 N/A N/A N/A N/A N/A 0.748±0.00 0.125±0.00 N/A 0.068±0.03 N/A 0.024±0.01 N/A N/A 3.640±3.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WQ CIL_0001WQ_0002 CGP 5:77349240-81825133
CIL_0001WJ CIL_0001WJ_0002 CGP 5:81020138-83355195

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0005886 IEA plasma membrane
GO:0007218 IEA neuropeptide signaling pathway
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061121 lphn3.1 latrophilin 3.1 protein_coding Danio_rerio
ENSDARG00000090624 LPHN3 (2 of 2) latrophilin 3 protein_coding Danio_rerio
ENSG00000150471 LPHN3 latrophilin 3 protein_coding Homo_sapiens

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