C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latrophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122037 Lphn3-023 ENSMUSG00000037605 10090 + 5:81309912-81795216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000122037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000122037 0.182±0.00 0.590±0.15 0.310±0.00 14.954±0.00 0.416±0.00 0.473±0.04 0.091±0.00 0.115±0.03 0.129±0.01 0.028±0.01 1.479±0.58 0.162±0.08 1.295±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WQ CIL_0001WQ_0002 CGP 5:77349240-81825133
CIL_0001WJ CIL_0001WJ_0002 CGP 5:81020138-83355195

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0005886 IEA plasma membrane
GO:0007218 IEA neuropeptide signaling pathway
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131113 LPHN3 (2 of 2)-201 protein_coding Danio_rerio 0 327
ENST00000502815 LPHN3-002 protein_coding Homo_sapiens 0 3332
ENST00000504896 LPHN3-012 protein_coding Homo_sapiens 0 4475
ENST00000506700 LPHN3-015 protein_coding Homo_sapiens 0 4638
ENST00000506720 LPHN3-008 protein_coding Homo_sapiens 0 4431
ENST00000506746 LPHN3-009 protein_coding Homo_sapiens 0 4590
ENST00000507164 LPHN3-004 protein_coding Homo_sapiens 0 4590
ENST00000507625 LPHN3-016 protein_coding Homo_sapiens 0 5666
ENST00000508078 LPHN3-017 processed_transcript Homo_sapiens 0 614
ENST00000508693 LPHN3-011 protein_coding Homo_sapiens 0 4431
ENST00000508946 LPHN3-007 protein_coding Homo_sapiens 0 4470
ENST00000509089 LPHN3-018 retained_intron Homo_sapiens 0 291
ENST00000509896 LPHN3-013 protein_coding Homo_sapiens 0 4434
ENST00000511324 LPHN3-014 protein_coding Homo_sapiens 0 4593
ENST00000512091 LPHN3-001 protein_coding Homo_sapiens 0 4479
ENST00000514157 LPHN3-006 protein_coding Homo_sapiens 0 4634
ENST00000514591 LPHN3-003 protein_coding Homo_sapiens 0 5553
ENST00000514996 LPHN3-010 protein_coding Homo_sapiens 0 4628
ENST00000545650 LPHN3-201 protein_coding Homo_sapiens 0 5064

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