C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member Z
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037894 H2afz 10090 + 3:137864487-137866922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041045 H2afz-001 137864487-137866922 protein_coding
  ENSMUST00000125821 H2afz-003 137865128-137866386 retained_intron
  ENSMUST00000138010 H2afz-002 137864980-137866535 retained_intron
  ENSMUST00000172696 H2afz-008 137864694-137866447 nonsense_mediated_decay
  ENSMUST00000173666 H2afz-006 137864591-137866083 processed_transcript
  ENSMUST00000173790 H2afz-007 137864613-137866507 protein_coding
  ENSMUST00000174561 H2afz-005 137864573-137866818 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041045ENSMUST00000172696ENSMUST00000173666ENSMUST00000173790ENSMUST00000174561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041045 45.747±28.52 11.193±2.40 180.849±42.20 301.481±86.58 20.701±5.47 37.821±2.53 9.624±1.96 32.192±1.61 237.343±253.77 31.433±3.45 13.038±2.04 51.786±17.26 140.770±156.12 89.185±15.08
ENSMUST00000172696 34.382±0.00 N/A N/A 94.982±0.00 41.048±10.99 N/A 22.392±1.48 N/A N/A N/A 31.286±5.58 456.614±147.40 243.467±178.48 116.565±16.70
ENSMUST00000173666 183.279±106.58 62.299±13.59 N/A N/A 92.271±9.32 146.417±21.63 29.420±5.85 109.628±9.38 29.710±4.36 114.280±7.58 N/A 204.724±27.94 122.152±94.48 253.170±22.36
ENSMUST00000173790 N/A N/A 97.565±0.00 40.964±0.00 N/A N/A N/A N/A N/A N/A 24.505±3.71 N/A 110.195±77.28 N/A
ENSMUST00000174561 N/A 6.294±0.00 N/A 29.375±0.00 N/A N/A N/A N/A N/A N/A N/A 105.841±0.00 65.906±43.65 28.163±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005720 IEA nuclear heterochromatin
GO:0007275 IEA multicellular organismal development
GO:0031490 IEA chromatin DNA binding
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071392 IEA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000164032 H2AFZ H2A histone family, member Z protein_coding Homo_sapiens

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