C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Z
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041045 H2afz-001 ENSMUSG00000037894 10090 + 3:137864487-137866922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041045 45.747±28.52 11.193±2.40 180.849±42.20 301.481±86.58 20.701±5.47 37.821±2.53 9.624±1.96 32.192±1.61 237.343±253.77 31.433±3.45 13.038±2.04 51.786±17.26 140.770±156.12 89.185±15.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005720 IEA nuclear heterochromatin
GO:0007275 IEA multicellular organismal development
GO:0031490 IEA chromatin DNA binding
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071392 IEA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296417 H2AFZ-001 protein_coding Homo_sapiens 0 1411
ENST00000394213 H2AFZP3-001 processed_pseudogene Homo_sapiens 0 521
ENST00000416034 H2AFZP1-001 processed_pseudogene Homo_sapiens 0 424
ENST00000511203 H2AFZ-003 retained_intron Homo_sapiens 0 730
ENST00000511319 H2AFZ-004 retained_intron Homo_sapiens 0 1182
ENST00000511348 H2AFZ-002 retained_intron Homo_sapiens 0 734
ENST00000521867 RP11-152C15.1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000527366 H2AFZ-006 retained_intron Homo_sapiens 0 492
ENST00000529158 H2AFZ-005 processed_transcript Homo_sapiens 0 1096
ENST00000534148 H2AFZP4-001 processed_pseudogene Homo_sapiens 0 387

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