C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Z
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172696 H2afz-008 ENSMUSG00000037894 10090 + 3:137864694-137866447 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartMuscleOvaryPlacentaTestisENSMUST00000172696
Transcript ID Adipose Brain Breast Heart Muscle Ovary Placenta Testis
ENSMUST00000172696 34.382±0.00 94.982±0.00 41.048±10.99 22.392±1.48 31.286±5.58 456.614±147.40 243.467±178.48 116.565±16.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296417 H2AFZ-001 protein_coding Homo_sapiens 0 405
ENST00000394213 H2AFZP3-001 processed_pseudogene Homo_sapiens 0 344
ENST00000416034 H2AFZP1-001 processed_pseudogene Homo_sapiens 3e-24 115
ENST00000511203 H2AFZ-003 retained_intron Homo_sapiens 0 316
ENST00000511319 H2AFZ-004 retained_intron Homo_sapiens 0 405
ENST00000511348 H2AFZ-002 retained_intron Homo_sapiens 5e-33 147
ENST00000521867 RP11-152C15.1-001 processed_pseudogene Homo_sapiens 2e-26 122
ENST00000527366 H2AFZ-006 retained_intron Homo_sapiens 0 316
ENST00000529158 H2AFZ-005 processed_transcript Homo_sapiens 0 405
ENST00000534148 H2AFZP4-001 processed_pseudogene Homo_sapiens 0 272

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