C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rap guanine nucleotide exchange factor (GEF)-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038020 Rapgefl1 10090 + 11:98836785-98853697 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037640 Rapgefl1-004 98845086-98847355 retained_intron
  ENSMUST00000107479 Rapgefl1-001 98836785-98853697 protein_coding
  ENSMUST00000139889 Rapgefl1-002 98850332-98852999 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037640ENSMUST00000107479ENSMUST00000139889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037640 N/A 0.425±0.00 N/A 8.913±0.00 N/A N/A N/A N/A 0.298±0.00 N/A 0.045±0.00 0.359±0.00 0.053±0.00 N/A
ENSMUST00000107479 0.472±0.35 0.550±0.32 10.851±0.80 6.397±7.51 1.926±0.84 25.034±7.49 0.304±0.13 0.310±0.12 0.193±0.08 1.056±0.14 0.065±0.03 1.963±1.00 0.073±0.04 0.241±0.12
ENSMUST00000139889 0.740±0.26 0.442±0.21 12.797±0.38 6.404±0.18 2.115±0.63 27.587±8.06 0.422±0.09 1.013±0.40 0.325±0.15 2.967±2.04 0.063±0.03 2.732±1.08 0.136±0.04 0.452±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002GI CIL_0002GI_0002 CGP 11:98804905-98853697
CIL_0002GJ CIL_0002GJ_0002 CGP 11:98836785-98905040

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0007264 IEA small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079912 RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 protein_coding Danio_rerio
ENSG00000108352 RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 protein_coding Homo_sapiens

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