C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF)-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107479 Rapgefl1-001 ENSMUSG00000038020 10090 + 11:98836785-98853697 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107479
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107479 0.472±0.35 0.550±0.32 10.851±0.80 6.397±7.51 1.926±0.84 25.034±7.49 0.304±0.13 0.310±0.12 0.193±0.08 1.056±0.14 0.065±0.03 1.963±1.00 0.073±0.04 0.241±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002GI CIL_0002GI_0002 CGP 11:98804905-98853697
CIL_0002GJ CIL_0002GJ_0002 CGP 11:98836785-98905040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0007264 IEA small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264644 RAPGEFL1-007 protein_coding Homo_sapiens 0 1857
ENST00000456989 RAPGEFL1-005 protein_coding Homo_sapiens 0 1777
ENST00000496032 RAPGEFL1-002 retained_intron Homo_sapiens 0 350
ENST00000538884 RAPGEFL1-006 protein_coding Homo_sapiens 3e-35 152
ENST00000541245 RAPGEFL1-012 protein_coding Homo_sapiens 1e-38 163
ENST00000544503 RAPGEFL1-004 protein_coding Homo_sapiens 0 1840
ENST00000545893 RAPGEFL1-010 retained_intron Homo_sapiens 0 1483
ENST00000613811 RAPGEFL1-001 protein_coding Homo_sapiens 0 1886
ENST00000620260 RAPGEFL1-201 protein_coding Homo_sapiens 0 2440

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