C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002GI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108349-ENSG00000108352 CGP 9606 17:40140318-40195656
GeneTranscriptPositionBiotype
ENSG00000108349 (CASC3)
cancer susceptibility candidate 3 		ENST00000264645 (CASC3-001) 40140323-40172183 protein_coding
ENST00000394114 (CASC3-005) 40168438-40172164 retained_intron
ENST00000418132 (CASC3-004) 40140318-40167080 retained_intron
ENST00000474190 (CASC3-002) 40161797-40166857 nonsense_mediated_decay
ENST00000577605 (CASC3-008) 40163912-40168255 nonsense_mediated_decay
ENST00000579238 (CASC3-011) 40167366-40168119 retained_intron
ENST00000581849 (CASC3-009) 40140537-40162023 retained_intron
ENST00000583649 (CASC3-006) 40140544-40141547 retained_intron
ENST00000583902 (CASC3-010) 40167917-40169379 retained_intron
ENST00000584997 (CASC3-007) 40140842-40161864 protein_coding
ENSG00000108352 (RAPGEFL1)
Rap guanine nucleotide exchange factor (GEF)-like 1 		ENST00000264644 (RAPGEFL1-007) 40177095-40195656 protein_coding
ENST00000456989 (RAPGEFL1-005) 40177010-40193788 protein_coding
ENST00000469209 (RAPGEFL1-003) 40189210-40191037 retained_intron
ENST00000496032 (RAPGEFL1-002) 40191470-40192966 retained_intron
ENST00000538884 (RAPGEFL1-006) 40177115-40184294 protein_coding
ENST00000538981 (RAPGEFL1-008) 40181239-40188954 protein_coding
ENST00000541245 (RAPGEFL1-012) 40178249-40184308 protein_coding
ENST00000543876 (RAPGEFL1-011) 40177055-40189326 protein_coding
ENST00000544503 (RAPGEFL1-004) 40177077-40194190 protein_coding
ENST00000545893 (RAPGEFL1-010) 40188538-40193831 retained_intron
ENST00000613811 (RAPGEFL1-001) 40177495-40191357 protein_coding
ENST00000620260 (RAPGEFL1-201) 40177862-40195654 protein_coding
ENSG00000221555 (AC068669.1)
 ENST00000408628 (AC068669.1-201) 40150136-40150222 miRNA
ENSG00000274621 (MIR6867)
microRNA 6867 		ENST00000610636 (MIR6867-201) 40193597-40193663 miRNA
CIL_0002GI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078676-ENSMUSG00000038020 CGP 10090 11:98804905-98853697
GeneTranscriptPositionBiotype
ENSMUSG00000038020 (Rapgefl1)
Rap guanine nucleotide exchange factor (GEF)-like 1 		ENSMUST00000037640 (Rapgefl1-004) 98845086-98847355 retained_intron
ENSMUST00000107479 (Rapgefl1-001) 98836785-98853697 protein_coding
ENSMUST00000139889 (Rapgefl1-002) 98850332-98852999 retained_intron
ENSMUSG00000052915 (Msl1)
male-specific lethal 1 homolog (Drosophila) 		ENSMUST00000037915 (Msl1-001) 98795516-98807859 protein_coding
ENSMUST00000037930 (Msl1-003) 98798654-98805607 protein_coding
ENSMUST00000107485 (Msl1-004) 98795791-98801052 protein_coding
ENSMUST00000107487 (Msl1-002) 98795800-98806434 protein_coding
ENSMUST00000126969 (Msl1-005) 98800165-98804119 protein_coding
ENSMUST00000141016 (Msl1-006) 98804271-98805779 processed_transcript
ENSMUSG00000078676 (Casc3)
cancer susceptibility candidate 3 		ENSMUST00000017384 (Casc3-001) 98804905-98833814 protein_coding
ENSMUST00000144220 (Casc3-002) 98810150-98810928 processed_transcript
ENSMUST00000147065 (Casc3-003) 98810161-98822537 processed_transcript
ENSMUST00000169695 (Casc3-201) 98809808-98833806 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GI_0001ENSG00000108349ENST00000264645ENST00000394114ENST00000418132ENST00000474190ENST00000577605ENST00000579238ENST00000581849ENST00000583649ENST00000583902ENST00000584997ENSG00000108352ENST00000264644ENST00000456989ENST00000469209ENST00000496032ENST00000538884ENST00000538981ENST00000541245ENST00000543876ENST00000544503ENST00000545893ENST00000613811ENST00000620260ENSG00000221555ENST00000408628ENSG00000274621ENST00000610636CIL_0002GI_0002ENSMUSG00000038020ENSMUST00000037640ENSMUST00000107479ENSMUST00000139889ENSMUSG00000052915ENSMUST00000037915ENSMUST00000037930ENSMUST00000107485ENSMUST00000107487ENSMUST00000126969ENSMUST00000141016ENSMUSG00000078676ENSMUST00000017384ENSMUST00000144220ENSMUST00000147065ENSMUST00000169695
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GI_0001ENSG00000108349ENST00000264645ENST00000418132ENST00000474190ENSG00000108352ENST00000264644ENST00000456989ENST00000469209ENST00000496032ENST00000541245ENST00000543876ENST00000544503ENST00000545893ENST00000613811ENST00000620260ENSG00000221555ENST00000408628ENSG00000274621ENST00000610636CIL_0002GI_0002ENSMUSG00000038020ENSMUST00000037640ENSMUST00000107479ENSMUST00000139889ENSMUSG00000052915ENSMUST00000037915ENSMUST00000037930ENSMUST00000107485ENSMUST00000107487ENSMUSG00000078676ENSMUST00000017384ENSMUST00000169695
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108349 ENST00000264645 38.735±0.00 22.297±0.00 1.326±0.00 16.341±10.59 15.681±9.44 13.046±7.58 7.315±5.53 12.977±9.20 7.862±2.34 14.865±9.97 12.724±8.46 30.736±18.05 15.530±2.59 48.362±8.32
ENST00000394114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418132 N/A N/A 6.138±0.00 1.549±0.00 2.245±0.00 4.135±0.00 1.591±0.00 N/A 8.466±0.00 3.876±0.00 N/A 3.705±0.00 N/A N/A
ENST00000474190 N/A N/A N/A 3.726±0.00 N/A N/A N/A 2.571±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108352 ENST00000264644 N/A N/A N/A N/A N/A N/A 0.064±0.01 N/A N/A N/A N/A 1.945±1.36 0.138±0.03 N/A
ENST00000456989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.096±0.00
ENST00000469209 N/A N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A N/A
ENST00000496032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.910±0.00 N/A N/A
ENST00000538884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541245 N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A N/A N/A N/A 0.540±0.00 N/A
ENST00000543876 N/A N/A 0.474±0.00 N/A N/A N/A 0.196±0.00 2.015±0.00 N/A N/A N/A N/A 0.219±0.00 N/A
ENST00000544503 N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A 0.298±0.00 N/A 0.186±0.00 0.127±0.00 N/A
ENST00000545893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENST00000613811 N/A N/A N/A 1.635±0.00 0.492±0.00 N/A N/A N/A 0.677±0.00 N/A N/A N/A 0.136±0.00 N/A
ENST00000620260 0.266±0.00 0.268±0.00 N/A 9.150±0.00 0.767±0.00 2.612±1.84 0.072±0.00 0.307±0.00 N/A 0.994±0.00 N/A 2.124±2.16 N/A 1.527±0.78
ENSG00000221555 ENST00000408628 N/A 5.064±0.00 N/A 1.074±0.00 N/A N/A N/A N/A 0.974±0.00 N/A N/A 105.780±0.00 N/A 1.497±0.35
ENSG00000274621 ENST00000610636 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038020 ENSMUST00000037640 N/A 0.425±0.00 N/A 8.913±0.00 N/A N/A N/A N/A 0.298±0.00 N/A 0.045±0.00 0.359±0.00 0.053±0.00 N/A
ENSMUST00000107479 0.472±0.35 0.550±0.32 10.851±0.80 6.397±7.51 1.926±0.84 25.034±7.49 0.304±0.13 0.310±0.12 0.193±0.08 1.056±0.14 0.065±0.03 1.963±1.00 0.073±0.04 0.241±0.12
ENSMUST00000139889 0.740±0.26 0.442±0.21 12.797±0.38 6.404±0.18 2.115±0.63 27.587±8.06 0.422±0.09 1.013±0.40 0.325±0.15 2.967±2.04 0.063±0.03 2.732±1.08 0.136±0.04 0.452±0.25
ENSMUSG00000052915 ENSMUST00000037915 8.635±2.93 11.178±2.93 12.309±0.98 19.283±4.13 9.366±3.79 5.789±1.71 5.143±0.13 6.242±0.21 6.285±2.05 12.966±2.02 7.941±0.53 12.711±4.59 5.906±0.84 23.146±6.35
ENSMUST00000037930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.816±0.00
ENSMUST00000107485 12.931±3.70 16.602±2.60 16.678±0.87 23.912±8.13 15.583±5.24 11.920±1.91 8.189±0.53 7.551±1.33 7.045±2.97 18.279±2.42 10.655±0.89 17.496±5.50 20.470±9.38 24.200±2.21
ENSMUST00000107487 N/A N/A N/A 20.995±0.00 N/A N/A N/A N/A N/A N/A N/A 21.702±0.00 N/A 31.061±0.00
ENSMUST00000126969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078676 ENSMUST00000017384 N/A N/A N/A N/A N/A N/A N/A N/A 4.405±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169695 13.806±3.32 21.807±3.51 12.544±1.55 22.517±8.77 13.480±6.49 15.770±2.62 6.183±1.98 9.966±1.08 8.911±3.27 19.286±0.98 6.720±0.50 14.570±4.39 10.095±1.58 13.914±0.40

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