C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002GJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108352-ENSG00000171475 CGP 9606 17:40177010-40284136
GeneTranscriptPositionBiotype
ENSG00000108352 (RAPGEFL1)
Rap guanine nucleotide exchange factor (GEF)-like 1 		ENST00000264644 (RAPGEFL1-007) 40177095-40195656 protein_coding
ENST00000456989 (RAPGEFL1-005) 40177010-40193788 protein_coding
ENST00000469209 (RAPGEFL1-003) 40189210-40191037 retained_intron
ENST00000496032 (RAPGEFL1-002) 40191470-40192966 retained_intron
ENST00000538884 (RAPGEFL1-006) 40177115-40184294 protein_coding
ENST00000538981 (RAPGEFL1-008) 40181239-40188954 protein_coding
ENST00000541245 (RAPGEFL1-012) 40178249-40184308 protein_coding
ENST00000543876 (RAPGEFL1-011) 40177055-40189326 protein_coding
ENST00000544503 (RAPGEFL1-004) 40177077-40194190 protein_coding
ENST00000545893 (RAPGEFL1-010) 40188538-40193831 retained_intron
ENST00000613811 (RAPGEFL1-001) 40177495-40191357 protein_coding
ENST00000620260 (RAPGEFL1-201) 40177862-40195654 protein_coding
ENSG00000171475 (WIPF2)
WAS/WASL interacting protein family, member 2 		ENST00000323571 (WIPF2-001) 40219322-40284136 protein_coding
ENST00000394103 (WIPF2-003) 40219357-40279849 protein_coding
ENST00000494757 (WIPF2-002) 40219322-40278907 processed_transcript
ENST00000578304 (WIPF2-010) 40256388-40260838 retained_intron
ENST00000578623 (WIPF2-012) 40273613-40278249 retained_intron
ENST00000582781 (WIPF2-006) 40219326-40279869 nonsense_mediated_decay
ENST00000583130 (WIPF2-004) 40219790-40278231 protein_coding
ENST00000583268 (WIPF2-011) 40219304-40277132 protein_coding
ENST00000584296 (WIPF2-009) 40219852-40262638 protein_coding
ENST00000585043 (WIPF2-007) 40219349-40279357 protein_coding
ENSG00000274621 (MIR6867)
microRNA 6867 		ENST00000610636 (MIR6867-201) 40193597-40193663 miRNA
CIL_0002GJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038020-ENSMUSG00000038013 CGP 10090 11:98836785-98905040
GeneTranscriptPositionBiotype
ENSMUSG00000038013 (Wipf2)
WAS/WASL interacting protein family, member 2 		ENSMUST00000037480 (Wipf2-001) 98863638-98905040 protein_coding
ENSMUST00000132006 (Wipf2-002) 98864117-98892840 retained_intron
ENSMUST00000142414 (Wipf2-004) 98863638-98892299 protein_coding
ENSMUST00000148439 (Wipf2-003) 98891173-98892097 retained_intron
ENSMUSG00000038020 (Rapgefl1)
Rap guanine nucleotide exchange factor (GEF)-like 1 		ENSMUST00000037640 (Rapgefl1-004) 98845086-98847355 retained_intron
ENSMUST00000107479 (Rapgefl1-001) 98836785-98853697 protein_coding
ENSMUST00000139889 (Rapgefl1-002) 98850332-98852999 retained_intron
ENSMUSG00000088485 (Gm23640)
predicted gene, 23640 		ENSMUST00000157860 (Gm23640-201) 98870396-98870499 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GJ_0001ENSG00000108352ENST00000264644ENST00000456989ENST00000469209ENST00000496032ENST00000538884ENST00000538981ENST00000541245ENST00000543876ENST00000544503ENST00000545893ENST00000613811ENST00000620260ENSG00000171475ENST00000323571ENST00000394103ENST00000494757ENST00000578304ENST00000578623ENST00000582781ENST00000583130ENST00000583268ENST00000584296ENST00000585043ENSG00000274621ENST00000610636CIL_0002GJ_0002ENSMUSG00000038013ENSMUST00000037480ENSMUST00000132006ENSMUST00000142414ENSMUST00000148439ENSMUSG00000038020ENSMUST00000037640ENSMUST00000107479ENSMUST00000139889ENSMUSG00000088485ENSMUST00000157860
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GJ_0001ENSG00000108352ENST00000264644ENST00000456989ENST00000469209ENST00000496032ENST00000541245ENST00000543876ENST00000544503ENST00000545893ENST00000613811ENST00000620260ENSG00000171475ENST00000323571ENST00000582781ENSG00000274621ENST00000610636CIL_0002GJ_0002ENSMUSG00000038013ENSMUST00000037480ENSMUSG00000038020ENSMUST00000037640ENSMUST00000107479ENSMUST00000139889ENSMUSG00000088485ENSMUST00000157860
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108352 ENST00000264644 N/A N/A N/A N/A N/A N/A 0.064±0.01 N/A N/A N/A N/A 1.945±1.36 0.138±0.03 N/A
ENST00000456989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.096±0.00
ENST00000469209 N/A N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A N/A
ENST00000496032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.910±0.00 N/A N/A
ENST00000538884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541245 N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A N/A N/A N/A 0.540±0.00 N/A
ENST00000543876 N/A N/A 0.474±0.00 N/A N/A N/A 0.196±0.00 2.015±0.00 N/A N/A N/A N/A 0.219±0.00 N/A
ENST00000544503 N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A 0.298±0.00 N/A 0.186±0.00 0.127±0.00 N/A
ENST00000545893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENST00000613811 N/A N/A N/A 1.635±0.00 0.492±0.00 N/A N/A N/A 0.677±0.00 N/A N/A N/A 0.136±0.00 N/A
ENST00000620260 0.266±0.00 0.268±0.00 N/A 9.150±0.00 0.767±0.00 2.612±1.84 0.072±0.00 0.307±0.00 N/A 0.994±0.00 N/A 2.124±2.16 N/A 1.527±0.78
ENSG00000171475 ENST00000323571 6.090±0.00 4.378±0.00 1.029±0.00 7.343±5.27 7.240±0.00 3.810±2.02 1.120±0.00 4.619±0.00 0.661±0.08 2.782±2.26 N/A 3.380±2.35 4.990±1.08 3.323±1.87
ENST00000394103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582781 N/A N/A N/A N/A 1.180±0.00 0.711±0.00 0.785±0.38 1.085±0.00 1.173±0.00 0.730±0.00 N/A N/A N/A N/A
ENST00000583130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274621 ENST00000610636 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038013 ENSMUST00000037480 1.453±0.42 1.443±1.48 9.648±0.17 3.629±1.33 2.568±0.89 5.574±2.37 0.695±0.17 2.525±0.59 1.042±0.58 3.635±1.82 0.600±0.23 2.276±1.33 2.217±0.84 1.295±0.82
ENSMUST00000132006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038020 ENSMUST00000037640 N/A 0.425±0.00 N/A 8.913±0.00 N/A N/A N/A N/A 0.298±0.00 N/A 0.045±0.00 0.359±0.00 0.053±0.00 N/A
ENSMUST00000107479 0.472±0.35 0.550±0.32 10.851±0.80 6.397±7.51 1.926±0.84 25.034±7.49 0.304±0.13 0.310±0.12 0.193±0.08 1.056±0.14 0.065±0.03 1.963±1.00 0.073±0.04 0.241±0.12
ENSMUST00000139889 0.740±0.26 0.442±0.21 12.797±0.38 6.404±0.18 2.115±0.63 27.587±8.06 0.422±0.09 1.013±0.40 0.325±0.15 2.967±2.04 0.063±0.03 2.732±1.08 0.136±0.04 0.452±0.25
ENSMUSG00000088485 ENSMUST00000157860 N/A N/A N/A N/A 2484.260±0.00 N/A N/A N/A N/A N/A N/A 46.104±0.00 N/A N/A

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