C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128897 Pgap3-005 ENSMUSG00000038208 10090 - 11:98389624-98400435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryTestisENSMUST00000128897
Transcript ID Adrenal Breast Colon Lung Ovary Testis
ENSMUST00000128897 2.501±0.55 2.731±1.34 6.003±0.64 2.994±0.12 6.232±1.60 0.953±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0002PP CIL_0002PP_0002 CGP 11:98386450-98400490
CIL_0002PO CIL_0002PO_0002 CGP 11:98388677-98437716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006505 ISS GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 ISS hydrolase activity, acting on ester bonds
GO:0031227 ISS intrinsic component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300658 PGAP3-001 protein_coding Homo_sapiens 0 279
ENST00000309862 PGAP3-005 retained_intron Homo_sapiens 0 279
ENST00000378011 PGAP3-002 protein_coding Homo_sapiens 0 841
ENST00000429199 PGAP3-004 protein_coding Homo_sapiens 0 279
ENST00000579146 PGAP3-003 protein_coding Homo_sapiens 0 279
ENST00000582276 PGAP3-007 retained_intron Homo_sapiens 7e-32 141
ENST00000584620 PGAP3-009 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000614824 PGAP3-201 protein_coding Homo_sapiens 0 270

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