C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090827 Pgap3-001 ENSMUSG00000038208 10090 - 11:98388677-98400490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090827 4.369±1.45 6.426±1.25 5.089±0.83 3.409±2.28 5.975±2.30 22.380±4.61 5.830±0.72 12.283±1.33 2.353±0.75 9.025±1.19 0.773±0.46 10.938±4.06 3.303±1.04 1.774±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0002PP CIL_0002PP_0002 CGP 11:98386450-98400490
CIL_0002PO CIL_0002PO_0002 CGP 11:98388677-98437716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006505 ISS GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016788 ISS hydrolase activity, acting on ester bonds
GO:0031227 ISS intrinsic component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300658 PGAP3-001 protein_coding Homo_sapiens 0 1061
ENST00000309862 PGAP3-005 retained_intron Homo_sapiens 0 623
ENST00000378011 PGAP3-002 protein_coding Homo_sapiens 0 281
ENST00000429199 PGAP3-004 protein_coding Homo_sapiens 0 473
ENST00000577337 PGAP3-010 nonsense_mediated_decay Homo_sapiens 1e-29 134
ENST00000579146 PGAP3-003 protein_coding Homo_sapiens 0 473
ENST00000580898 PGAP3-008 retained_intron Homo_sapiens 0 444
ENST00000582276 PGAP3-007 retained_intron Homo_sapiens 0 348
ENST00000584620 PGAP3-009 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000584856 PGAP3-006 protein_coding Homo_sapiens 0 329
ENST00000614824 PGAP3-201 protein_coding Homo_sapiens 0 1013

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