C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134367 Hoxa7-004 ENSMUSG00000038236 10090 - 6:52215753-52218711 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000134367
Transcript ID Adrenal
ENSMUST00000134367 6.888±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P9 CIL_0003P9_0002 CGP 6:52206288-52221854
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0 239
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 193
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0 675
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 3e-25 121
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 6e-24 117
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 7e-24 117
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 3e-18 99
ENST00000519842 HOXA7-002 protein_coding Homo_sapiens 8e-27 124
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0 239
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0 296
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 8e-24 117

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