C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153280 Hoxa7-002 ENSMUSG00000038236 10090 - 6:52214491-52220393 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000153280
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000153280 6.534±3.58 6.185±1.47 8.455±3.30 5.705±2.31 18.521±4.75 14.985±6.80 0.375±0.09 3.945±0.44 1.747±0.20 4.735±1.37 0.526±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P9 CIL_0003P9_0002 CGP 6:52206288-52221854
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0 239
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 193
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0 767
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 3e-25 121
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 6e-24 117
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 7e-24 117
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 3e-18 99
ENST00000519842 HOXA7-002 protein_coding Homo_sapiens 1e-25 121
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0 239
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0 383
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 8e-24 117

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