| Transcript ID | Colon |
|---|---|
| ENSMUST00000048715 | 14.040±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | homeobox A7 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000048715  |
Hoxa7-201 |
ENSMUSG00000038236 |
10090 | - |
6:52215623-52218573  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007OD | CIL_0007OD_0003 | UCNEbase | 6:51462736-52602127 |
| CIL_0008QL | CIL_0008QL_0002 | VISTA | 6:51878169-52478777 |
| CIL_000911 | CIL_000911_0002 | VISTA | 6:51970433-52571615 |
| CIL_000811 | CIL_000811_0002 | VISTA | 6:52019082-52620287 |
| CIL_00097P | CIL_00097P_0002 | VISTA | 6:52142617-52744529 |
| CIL_0003P9 | CIL_0003P9_0002 | CGP | 6:52206288-52221854 |
| CIL_0003PA | CIL_0003PA_0002 | CGP | 6:52214491-52231089 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000122 | IDA | negative regulation of transcription from RNA polymerase II promoter |
| GO:0001525 | IEA | angiogenesis |
| GO:0001953 | IEA | negative regulation of cell-matrix adhesion |
| GO:0002686 | IEA | negative regulation of leukocyte migration |
| GO:0003677 | IDA | DNA binding |
| GO:0003700 | IDA | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | IDA | nucleus |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0008134 | IEA | transcription factor binding |
| GO:0009952 | IGI | anterior/posterior pattern specification |
| GO:0043565 | IEA | sequence-specific DNA binding |
| GO:0045617 | IEA | negative regulation of keratinocyte differentiation |
| GO:0045656 | IEA | negative regulation of monocyte differentiation |
| GO:0045892 | IEA | negative regulation of transcription, DNA-templated |
| GO:0045944 | IDA | positive regulation of transcription from RNA polymerase II promoter |
| GO:0048704 | IGI | embryonic skeletal system morphogenesis |
| GO:0048863 | IDA | stem cell differentiation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000222728
|
HOXA6-001 | protein_coding | Homo_sapiens | 0 | 239 |
|
ENST00000239151
|
HOXB5-001 | protein_coding | Homo_sapiens | 0 | 193 |
|
ENST00000242159
|
HOXA7-001 | protein_coding | Homo_sapiens | 0 | 1171 |
|
ENST00000306324
|
HOXD4-001 | protein_coding | Homo_sapiens | 3e-25 | 121 |
|
ENST00000317201
|
HOXA3-002 | protein_coding | Homo_sapiens | 6e-24 | 117 |
|
ENST00000332503
|
HOXB4-001 | protein_coding | Homo_sapiens | 4.99997e-41 | 174 |
|
ENST00000396352
|
HOXA3-001 | protein_coding | Homo_sapiens | 7e-24 | 117 |
|
ENST00000468418
|
HOXD3-001 | nonsense_mediated_decay | Homo_sapiens | 3e-18 | 99 |
|
ENST00000519842
|
HOXA7-002 | protein_coding | Homo_sapiens | 0 | 494 |
|
ENST00000521478
|
HOXA6-002 | processed_transcript | Homo_sapiens | 0 | 239 |
|
ENST00000523796
|
HOXA7-003 | processed_transcript | Homo_sapiens | 0 | 381 |
|
ENST00000612286
|
HOXA3-201 | protein_coding | Homo_sapiens | 8e-24 | 117 |
