C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centrosomal protein 250
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038241 Cep250 10090 + 2:155956458-155998900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039994 Cep250-201 155956558-155998900 protein_coding
  ENSMUST00000094421 Cep250-202 155956558-155998900 protein_coding
  ENSMUST00000109618 Cep250-003 155956594-155967794 protein_coding
  ENSMUST00000109619 Cep250-001 155956558-155998900 protein_coding
  ENSMUST00000128683 Cep250-008 155985915-155990596 nonsense_mediated_decay
  ENSMUST00000148191 Cep250-005 155976389-155998900 retained_intron
  ENSMUST00000149905 Cep250-004 155956458-155986613 retained_intron
  ENSMUST00000151569 Cep250-009 155956572-155974445 protein_coding
  ENSMUST00000155160 Cep250-006 155979558-155981445 retained_intron
  ENSMUST00000156355 Cep250-007 155985883-155989603 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039994ENSMUST00000094421ENSMUST00000109619ENSMUST00000148191
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039994 1.186±0.00 1.635±0.22 N/A 1.111±0.00 1.181±0.09 0.542±0.09 0.469±0.00 1.111±0.36 0.518±0.06 1.357±0.45 0.373±0.08 2.200±2.22 6.294±0.00 N/A
ENSMUST00000094421 1.132±0.03 N/A 0.714±0.00 10.483±0.00 0.852±0.16 0.644±0.00 0.497±0.18 0.465±0.05 0.728±0.48 0.773±0.00 0.330±0.00 0.793±0.04 1.469±1.05 12.941±0.00
ENSMUST00000109619 1.464±0.13 0.876±0.20 1.656±0.22 5.478±1.83 1.632±0.49 1.132±0.33 0.516±0.05 1.190±0.28 1.481±1.08 1.760±0.59 0.670±0.12 3.371±3.59 2.492±0.64 4.460±3.01
ENSMUST00000148191 2.606±0.00 1.103±0.36 2.351±0.28 3.529±1.32 2.050±0.78 1.575±0.35 0.449±0.11 0.970±0.17 3.989±2.68 1.384±0.40 0.418±0.12 4.020±2.69 3.554±2.87 1.341±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0002I5 CIL_0002I5_0002 CGP 2:155941023-155998900
CIL_0005FS CIL_0005FS_0002 CGP 2:155956458-156007977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 IEA mitotic cell cycle
GO:0005515 IEA protein binding
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0005929 IEA cilium
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0008104 IEA protein localization
GO:0010457 IEA centriole-centriole cohesion
GO:0019901 IEA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0030997 IEA regulation of centriole-centriole cohesion
GO:0031616 IDA spindle pole centrosome
GO:0033365 IEA protein localization to organelle
GO:0043234 IEA protein complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020834 CEP250 centrosomal protein 250kDa protein_coding Danio_rerio
ENSG00000126001 CEP250 centrosomal protein 250kDa protein_coding Homo_sapiens

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