C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038301 Snx10 10090 + 6:51523901-51590679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049152 Snx10-001 51523901-51590679 protein_coding
  ENSMUST00000114439 Snx10-004 51544524-51589072 protein_coding
  ENSMUST00000137212 Snx10-006 51524285-51588436 protein_coding
  ENSMUST00000140560 Snx10-005 51524260-51580377 protein_coding
  ENSMUST00000149024 Snx10-003 51544566-51589043 nonsense_mediated_decay
  ENSMUST00000155724 Snx10-002 51523982-51564088 retained_intron
  ENSMUST00000179365 Snx10-201 51544523-51590670 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049152ENSMUST00000114439ENSMUST00000137212ENSMUST00000140560ENSMUST00000149024ENSMUST00000155724ENSMUST00000179365
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049152 1.985±0.58 0.725±0.36 3.252±0.73 7.120±0.32 1.449±0.46 0.282±0.12 0.894±0.24 0.820±0.27 1.647±0.84 1.830±0.49 2.550±1.13 1.037±0.66 5.530±2.03 N/A
ENSMUST00000114439 2.341±0.00 N/A N/A N/A 1.848±0.45 N/A 0.566±0.00 0.954±0.19 N/A 1.391±0.00 N/A 0.972±0.20 N/A 0.190±0.00
ENSMUST00000137212 4.143±0.46 0.740±0.36 N/A N/A 3.690±1.34 0.741±0.55 0.860±0.11 0.863±0.17 1.850±0.22 1.069±0.25 N/A 0.916±0.50 N/A N/A
ENSMUST00000140560 N/A N/A N/A 22.620±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.744±0.00
ENSMUST00000149024 N/A 0.457±0.00 N/A 24.131±0.00 N/A N/A N/A N/A N/A N/A N/A 4.367±2.98 21.929±9.21 0.636±0.00
ENSMUST00000155724 0.562±0.00 0.182±0.09 N/A N/A 0.486±0.08 N/A N/A 0.106±0.00 0.444±0.01 0.439±0.12 N/A 0.439±0.21 N/A N/A
ENSMUST00000179365 4.063±0.62 0.814±0.38 2.054±0.73 N/A 3.783±1.33 1.079±0.34 0.740±0.36 0.395±0.13 2.786±2.65 0.601±0.05 1.667±1.09 2.385±1.60 5.538±2.70 0.908±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005545 ISS 1-phosphatidylinositol binding
GO:0005634 IDA nucleus
GO:0005768 IBA endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005813 ISS centrosome
GO:0006886 IBA intracellular protein transport
GO:0007032 ISS endosome organization
GO:0030316 IMP osteoclast differentiation
GO:0031313 ISS extrinsic component of endosome membrane
GO:0035091 IBA phosphatidylinositol binding
GO:0042384 ISS cilium assembly
GO:0051117 IEA ATPase binding
GO:0061512 ISS protein localization to cilium
GO:0071539 ISS protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004405 snx10a sorting nexin 10a protein_coding Danio_rerio
ENSDARG00000040474 snx10b sorting nexin 10b protein_coding Danio_rerio
ENSG00000086300 SNX10 sorting nexin 10 protein_coding Homo_sapiens

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