C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049152 Snx10-001 ENSMUSG00000038301 10090 + 6:51523901-51590679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000049152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000049152 1.985±0.58 0.725±0.36 3.252±0.73 7.120±0.32 1.449±0.46 0.282±0.12 0.894±0.24 0.820±0.27 1.647±0.84 1.830±0.49 2.550±1.13 1.037±0.66 5.530±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005545 ISS 1-phosphatidylinositol binding
GO:0005634 IDA nucleus
GO:0005768 IBA endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005813 ISS centrosome
GO:0006886 IBA intracellular protein transport
GO:0007032 ISS endosome organization
GO:0030316 IMP osteoclast differentiation
GO:0031313 ISS extrinsic component of endosome membrane
GO:0035091 IBA phosphatidylinositol binding
GO:0042384 ISS cilium assembly
GO:0051117 IEA ATPase binding
GO:0061512 ISS protein localization to cilium
GO:0071539 ISS protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338523 SNX10-002 protein_coding Homo_sapiens 0 885
ENST00000396376 SNX10-001 protein_coding Homo_sapiens 0 885
ENST00000409367 SNX10-007 protein_coding Homo_sapiens 0 713
ENST00000409838 SNX10-004 protein_coding Homo_sapiens 0 571
ENST00000416246 SNX10-005 protein_coding Homo_sapiens 0 595
ENST00000446848 SNX10-201 protein_coding Homo_sapiens 0 885
ENST00000462993 SNX10-003 processed_transcript Homo_sapiens 0 409
ENST00000619420 SNX10-202 protein_coding Homo_sapiens 0 824

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