C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006AB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100991-ENSG00000088298 CGP 9606 20:35002404-35147364
GeneTranscriptPositionBiotype
ENSG00000088298 (EDEM2)
ER degradation enhancer, mannosidase alpha-like 2 		ENST00000374491 (EDEM2-002) 35115364-35147319 protein_coding
ENST00000374492 (EDEM2-001) 35115357-35147364 protein_coding
ENSG00000100991 (TRPC4AP)
transient receptor potential cation channel, subfamily C, member 4 associated protein 		ENST00000252015 (TRPC4AP-001) 35002404-35092871 protein_coding
ENST00000451813 (TRPC4AP-002) 35002404-35092807 protein_coding
ENSG00000201151 (SNORD56)
Small nucleolar RNA SNORD56 		ENST00000364281 (SNORD56.1-205) 35117136-35117207 snoRNA
ENSG00000202150 (RNU6-407P)
RNA, U6 small nuclear 407, pseudogene 		ENST00000365280 (RNU6-407P-201) 35030317-35030420 snRNA
CIL_0006AB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038324-ENSMUSG00000038312 CGP 10090 2:155634271-155729475
GeneTranscriptPositionBiotype
ENSMUSG00000038312 (Edem2)
ER degradation enhancer, mannosidase alpha-like 2 		ENSMUST00000040833 (Edem2-001) 155701677-155729475 protein_coding
ENSMUST00000131350 (Edem2-004) 155708535-155710986 retained_intron
ENSMUST00000139868 (Edem2-002) 155708980-155716359 retained_intron
ENSMUST00000148571 (Edem2-003) 155705718-155713318 processed_transcript
ENSMUSG00000038324 (Trpc4ap)
transient receptor potential cation channel, subfamily C, member 4 associated protein 		ENSMUST00000041059 (Trpc4ap-001) 155634271-155692384 protein_coding
ENSMUST00000103140 (Trpc4ap-002) 155634308-155692332 protein_coding
ENSMUST00000130755 (Trpc4ap-004) 155653104-155692382 retained_intron
ENSMUST00000136764 (Trpc4ap-006) 155673057-155692123 processed_transcript
ENSMUST00000140370 (Trpc4ap-005) 155643594-155663822 retained_intron
ENSMUST00000143115 (Trpc4ap-009) 155635596-155637782 retained_intron
ENSMUST00000146484 (Trpc4ap-008) 155638983-155640540 retained_intron
ENSMUST00000147913 (Trpc4ap-007) 155665882-155668478 retained_intron
ENSMUST00000152548 (Trpc4ap-003) 155638976-155673051 retained_intron
ENSMUST00000153246 (Trpc4ap-010) 155634745-155637736 processed_transcript
ENSMUSG00000074652 (Myh7b)
myosin, heavy chain 7B, cardiac muscle, beta 		ENSMUST00000092995 (Myh7b-001) 155611212-155634307 protein_coding
ENSMUST00000124415 (Myh7b-002) 155629060-155630384 processed_transcript
ENSMUST00000154656 (Myh7b-003) 155633451-155634203 retained_intron
ENSMUSG00000088695 (Gm22334)
predicted gene, 22334 		ENSMUST00000158070 (Gm22334-201) 155652892-155653024 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AB_0001ENSG00000088298ENST00000374491ENST00000374492ENSG00000100991ENST00000252015ENST00000451813ENSG00000201151ENST00000364281ENSG00000202150ENST00000365280CIL_0006AB_0002ENSMUSG00000038312ENSMUST00000040833ENSMUST00000131350ENSMUST00000139868ENSMUST00000148571ENSMUSG00000038324ENSMUST00000041059ENSMUST00000103140ENSMUST00000130755ENSMUST00000136764ENSMUST00000140370ENSMUST00000143115ENSMUST00000146484ENSMUST00000147913ENSMUST00000152548ENSMUST00000153246ENSMUSG00000074652ENSMUST00000092995ENSMUST00000124415ENSMUST00000154656ENSMUSG00000088695ENSMUST00000158070
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AB_0001ENSG00000088298ENST00000374491ENST00000374492ENSG00000100991ENST00000252015ENST00000451813ENSG00000201151ENST00000364281ENSG00000202150ENST00000365280CIL_0006AB_0002ENSMUSG00000038312ENSMUST00000040833ENSMUST00000148571ENSMUSG00000038324ENSMUST00000041059ENSMUST00000103140ENSMUST00000130755ENSMUSG00000074652ENSMUST00000092995ENSMUSG00000088695ENSMUST00000158070
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088298 ENST00000374491 N/A N/A N/A 0.770±0.00 N/A 1.052±0.00 0.638±0.34 9.482±0.00 3.715±2.42 2.819±0.00 0.969±0.12 3.755±1.86 7.316±0.00 1.759±0.00
ENST00000374492 7.656±0.00 12.850±0.00 N/A 1.890±1.07 4.702±3.28 2.140±1.83 1.744±1.53 6.765±2.54 13.037±0.00 4.831±2.27 2.637±0.00 5.075±3.57 29.526±3.48 4.614±1.67
ENSG00000100991 ENST00000252015 9.530±0.00 6.632±0.00 N/A 8.054±1.47 8.733±5.13 4.682±0.04 4.013±2.54 9.628±5.22 7.247±0.00 6.363±0.00 8.796±2.87 12.198±4.63 20.442±0.59 10.925±1.61
ENST00000451813 9.073±0.00 14.015±0.00 1.035±0.00 9.625±5.66 11.139±0.00 6.526±0.00 4.441±3.16 7.514±0.00 7.147±0.00 4.485±0.00 19.717±0.00 5.914±1.92 9.902±6.39 10.292±2.66
ENSG00000201151 ENST00000364281 N/A 1.816±0.00 N/A 1.391±0.00 0.686±0.00 N/A N/A 1.365±0.00 N/A N/A N/A N/A N/A 1.604±0.00
ENSG00000202150 ENST00000365280 1.235±0.00 0.212±0.00 N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038312 ENSMUST00000040833 15.723±3.92 100.018±6.69 20.838±4.10 8.828±4.93 18.270±11.49 44.748±20.85 4.201±1.35 22.870±6.05 27.234±11.30 28.602±10.30 1.795±0.50 49.203±30.56 57.894±23.73 11.471±4.51
ENSMUST00000131350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148571 N/A N/A 13.750±0.00 13.517±0.00 4.345±0.00 N/A 1.605±0.09 N/A N/A N/A N/A 3.515±0.00 N/A N/A
ENSMUSG00000038324 ENSMUST00000041059 52.116±4.33 46.406±8.93 33.646±1.89 40.093±18.68 43.796±13.82 55.448±6.60 30.371±5.04 41.222±3.34 30.298±5.74 48.907±3.92 34.603±5.08 72.722±25.02 41.876±17.33 28.306±13.09
ENSMUST00000103140 7.974±0.00 37.358±8.84 N/A 7.505±0.00 11.101±1.79 10.037±0.00 N/A 7.664±1.04 7.901±2.30 N/A 6.498±0.69 11.858±1.81 19.000±5.68 5.813±0.56
ENSMUST00000130755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.340±0.00 N/A
ENSMUST00000136764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074652 ENSMUST00000092995 N/A N/A N/A N/A N/A N/A 9.232±2.04 N/A 3.020±0.31 N/A 3.522±0.00 N/A N/A N/A
ENSMUST00000124415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088695 ENSMUST00000158070 N/A N/A 8.479±0.00 7.448±0.00 N/A N/A 1052.420±0.00 2091.270±0.00 N/A N/A N/A N/A 9.679±0.00 N/A

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