C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: focadhesin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097992 Focad-001 ENSMUSG00000038368 10090 + 4:88094630-88411006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097992 5.942±3.25 4.910±0.60 2.449±0.35 3.118±2.22 3.950±0.50 2.201±0.34 2.219±0.81 2.120±0.28 1.842±0.60 2.603±0.95 1.710±0.45 4.973±0.87 1.930±0.49 1.895±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0003 CGP 4:87769925-88411011
CIL_0007D1 CIL_0007D1_0002 CGP 4:88094629-88438928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005925 ISS focal adhesion
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338382 FOCAD-201 protein_coding Homo_sapiens 0 5435
ENST00000380249 FOCAD-001 protein_coding Homo_sapiens 0 5435
ENST00000603044 FOCAD-012 protein_coding Homo_sapiens 0 667
ENST00000603610 FOCAD-016 processed_transcript Homo_sapiens 4.00001e-40 167
ENST00000603631 FOCAD-015 processed_transcript Homo_sapiens 0 300
ENST00000603648 FOCAD-003 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000603695 FOCAD-014 protein_coding Homo_sapiens 0 568
ENST00000603844 FOCAD-004 processed_transcript Homo_sapiens 0 316
ENST00000604254 FOCAD-013 protein_coding Homo_sapiens 0 525
ENST00000605086 FOCAD-002 protein_coding Homo_sapiens 0 4069

Loading