C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: focadhesin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159342 Focad-009 ENSMUSG00000038368 10090 + 4:88121299-88411004 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleOvaryPlacentaENSMUST00000159342
Transcript ID Brain Colon Liver Muscle Ovary Placenta
ENSMUST00000159342 1.795±0.00 0.664±0.03 0.521±0.09 0.404±0.00 2.167±0.00 0.708±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0003 CGP 4:87769925-88411011
CIL_0007D1 CIL_0007D1_0002 CGP 4:88094629-88438928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338382 FOCAD-201 protein_coding Homo_sapiens 0 4183
ENST00000380249 FOCAD-001 protein_coding Homo_sapiens 0 4183
ENST00000603044 FOCAD-012 protein_coding Homo_sapiens 0 667
ENST00000603610 FOCAD-016 processed_transcript Homo_sapiens 4.00001e-40 167
ENST00000603631 FOCAD-015 processed_transcript Homo_sapiens 0 300
ENST00000603648 FOCAD-003 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000603695 FOCAD-014 protein_coding Homo_sapiens 0 568
ENST00000603844 FOCAD-004 processed_transcript Homo_sapiens 0 316
ENST00000604254 FOCAD-013 protein_coding Homo_sapiens 0 525
ENST00000605086 FOCAD-002 protein_coding Homo_sapiens 0 4069

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