C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET binding factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038371 Sbf2 10090 - 7:110308013-110614922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033058 Sbf2-201 110308022-110614920 protein_coding
  ENSMUST00000164525 Sbf2-012 110341327-110364586 protein_coding
  ENSMUST00000164559 Sbf2-011 110422447-110442293 protein_coding
  ENSMUST00000164599 Sbf2-013 110329933-110362145 protein_coding
  ENSMUST00000164759 Sbf2-001 110308013-110614922 protein_coding
  ENSMUST00000165449 Sbf2-003 110377256-110614914 retained_intron
  ENSMUST00000165992 Sbf2-009 110320741-110340285 retained_intron
  ENSMUST00000166020 Sbf2-002 110309398-110614761 protein_coding
  ENSMUST00000166885 Sbf2-010 110441474-110462932 protein_coding
  ENSMUST00000167652 Sbf2-008 110462876-110614761 nonsense_mediated_decay
  ENSMUST00000167880 Sbf2-006 110425626-110614882 retained_intron
  ENSMUST00000169740 Sbf2-005 110339184-110352241 retained_intron
  ENSMUST00000171218 Sbf2-007 110441287-110614905 protein_coding
  ENSMUST00000171378 Sbf2-004 110377567-110614896 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033058ENSMUST00000164759ENSMUST00000166020ENSMUST00000171218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033058 N/A N/A 1.410±0.00 19.589±7.06 N/A N/A 1.322±0.21 2.733±0.73 N/A N/A 0.303±0.10 N/A 1.779±0.04 7.805±0.57
ENSMUST00000164759 10.683±2.26 6.043±1.92 5.897±0.40 4.111±1.89 7.079±2.18 8.669±0.44 5.297±0.53 7.531±1.24 2.607±1.04 10.453±0.67 1.007±0.36 10.726±2.40 3.935±3.07 8.412±1.92
ENSMUST00000166020 N/A N/A N/A 2.787±0.00 N/A N/A N/A N/A N/A N/A 0.369±0.00 2.311±1.09 1.400±0.08 3.787±0.00
ENSMUST00000171218 N/A N/A N/A N/A N/A N/A N/A N/A 2.943±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0004J8 CIL_0004J8_0002 CGP 7:110221703-110614922
CIL_0004J7 CIL_0004J7_0002 CGP 7:110308013-110629820

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005774 IDA vacuolar membrane
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0019208 IDA phosphatase regulator activity
GO:0019902 IPI phosphatase binding
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0035091 IDA phosphatidylinositol binding
GO:0042803 IPI protein homodimerization activity
GO:0050790 IDA regulation of catalytic activity
GO:0051262 IPI protein tetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059460 sbf2 SET binding factor 2 protein_coding Danio_rerio
ENSG00000133812 SBF2 SET binding factor 2 protein_coding Homo_sapiens

Loading