C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET binding factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133812 SBF2 9606 - 11:9778667-10294207 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256190 SBF2-001 9778667-10294207 protein_coding
  ENST00000420722 SBF2-008 9853707-9993104 protein_coding
  ENST00000524961 SBF2-011 9812586-9819505 processed_transcript
  ENST00000525040 SBF2-006 9779154-9787973 retained_intron
  ENST00000525697 SBF2-013 9808574-9810472 processed_transcript
  ENST00000526353 SBF2-004 9956568-9968356 retained_intron
  ENST00000527019 SBF2-007 9993012-10044606 processed_transcript
  ENST00000528478 SBF2-012 9795914-9812754 retained_intron
  ENST00000529587 SBF2-014 9781548-9785349 retained_intron
  ENST00000530741 SBF2-009 9808912-9839603 protein_coding
  ENST00000532095 SBF2-015 9784933-9789204 protein_coding
  ENST00000533584 SBF2-010 9812635-9829668 retained_intron
  ENST00000533661 SBF2-003 10016468-10042990 retained_intron
  ENST00000533770 SBF2-002 9838039-10193957 retained_intron
  ENST00000617179 SBF2-201 9778667-10042981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256190ENST00000525040ENST00000526353ENST00000533770ENST00000617179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256190 1.669±0.00 2.240±0.00 3.190±0.00 2.796±0.19 4.387±0.24 3.712±0.63 1.781±0.82 2.730±0.37 2.243±1.76 4.252±0.88 0.795±0.66 4.498±1.75 1.335±0.00 3.123±0.47
ENST00000525040 N/A 5.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.291±0.00 5.535±0.00 2.740±0.00 N/A
ENST00000526353 N/A N/A N/A N/A 1.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533770 N/A N/A 4.265±0.00 N/A 3.127±0.00 N/A 0.959±0.00 1.068±0.00 N/A N/A N/A 3.205±0.00 N/A N/A
ENST00000617179 N/A N/A N/A 1.761±0.00 N/A 4.013±0.00 1.057±0.00 1.424±0.00 0.429±0.00 N/A 1.679±0.00 2.576±0.00 2.492±0.92 1.900±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J8 CIL_0004J8_0001 CGP 11:9664077-10294207
CIL_0004J7 CIL_0004J7_0001 CGP 11:9778667-10307397

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005774 IEA vacuolar membrane
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0019208 IEA phosphatase regulator activity
GO:0019902 IEA phosphatase binding
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0035091 IEA phosphatidylinositol binding
GO:0042552 NAS myelination
GO:0042803 IEA protein homodimerization activity
GO:0051262 IEA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059460 sbf2 SET binding factor 2 protein_coding Danio_rerio
ENSMUSG00000038371 Sbf2 SET binding factor 2 protein_coding Mus_musculus

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