C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033058 Sbf2-201 ENSMUSG00000038371 10090 - 7:110308022-110614920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyMusclePlacentaTestisENSMUST00000033058
Transcript ID Bladder Brain Heart Kidney Muscle Placenta Testis
ENSMUST00000033058 1.410±0.00 19.589±7.06 1.322±0.21 2.733±0.73 0.303±0.10 1.779±0.04 7.805±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0004J8 CIL_0004J8_0002 CGP 7:110221703-110614922
CIL_0004J7 CIL_0004J7_0002 CGP 7:110308013-110629820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005774 IDA vacuolar membrane
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0019208 IDA phosphatase regulator activity
GO:0019902 IPI phosphatase binding
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0035091 IDA phosphatidylinositol binding
GO:0042803 IPI protein homodimerization activity
GO:0051262 IPI protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256190 SBF2-001 protein_coding Homo_sapiens 0 5040
ENST00000420722 SBF2-008 protein_coding Homo_sapiens 0 1410
ENST00000524961 SBF2-011 processed_transcript Homo_sapiens 0 497
ENST00000525040 SBF2-006 retained_intron Homo_sapiens 0 619
ENST00000525697 SBF2-013 processed_transcript Homo_sapiens 3e-33 147
ENST00000526353 SBF2-004 retained_intron Homo_sapiens 0 368
ENST00000527019 SBF2-007 processed_transcript Homo_sapiens 0 881
ENST00000528478 SBF2-012 retained_intron Homo_sapiens 0 636
ENST00000529587 SBF2-014 retained_intron Homo_sapiens 0 318
ENST00000530741 SBF2-009 protein_coding Homo_sapiens 0 592
ENST00000532095 SBF2-015 protein_coding Homo_sapiens 0 298
ENST00000533584 SBF2-010 retained_intron Homo_sapiens 6e-38 161
ENST00000533661 SBF2-003 retained_intron Homo_sapiens 0 608
ENST00000533770 SBF2-002 retained_intron Homo_sapiens 0 4292
ENST00000617179 SBF2-201 protein_coding Homo_sapiens 0 4680

Loading