C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038384 Setd1b 10090 + 5:123142193-123167435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056053 Setd1b-201 123142957-123167410 protein_coding
  ENSMUST00000100731 Setd1b-004 123142193-123149981 retained_intron
  ENSMUST00000162839 Setd1b-003 123163381-123164107 protein_coding
  ENSMUST00000163030 Setd1b-001 123142193-123167435 protein_coding
  ENSMUST00000173221 Setd1b-005 123162709-123165162 retained_intron
  ENSMUST00000174836 Setd1b-002 123142193-123167410 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056053ENSMUST00000100731ENSMUST00000163030ENSMUST00000173221ENSMUST00000174836
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056053 1.516±0.14 2.404±0.60 1.458±0.00 1.167±0.57 1.373±0.68 0.439±0.05 1.147±0.39 0.885±0.45 3.144±0.04 0.398±0.06 1.413±0.84 5.907±4.86 2.880±1.47
ENSMUST00000100731 N/A N/A N/A N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000163030 1.030±0.00 4.939±1.29 N/A 1.706±0.69 1.986±0.00 N/A 0.916±0.17 0.683±0.38 1.588±0.00 N/A 1.044±0.24 1.446±0.05 1.117±0.00
ENSMUST00000173221 N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174836 0.655±0.00 N/A N/A 2.696±1.02 2.690±0.29 N/A 0.524±0.12 N/A 2.814±0.79 N/A 1.870±0.71 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006S CIL_00006S_0003 CGP 5:123103044-123167435
CIL_0002ZI CIL_0002ZI_0002 CGP 5:123142193-123182725

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035097 IEA histone methyltransferase complex
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0048188 ISS Set1C/COMPASS complex
GO:0051568 IEA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060847 setd1ba SET domain containing 1B, a protein_coding Danio_rerio
ENSG00000139718 SETD1B SET domain containing 1B protein_coding Homo_sapiens

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