C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054389-ENSDARG00000060847 CGP 7955 10:43334553-43385465
GeneTranscriptPositionBiotype
ENSDARG00000054389 (rhof)
ras homolog gene family, member F 		ENSDART00000076575 (rhof-001) 43334553-43345922 protein_coding
ENSDART00000141222 (rhof-002) 43335016-43344789 processed_transcript
ENSDARG00000093535 (si:ch211-265m20.8)
si:ch211-265m20.8 		ENSDART00000141500 (si:ch211-265m20.8-001) 43348123-43351311 retained_intron
ENSDART00000156057 (si:ch211-265m20.8-003) 43348261-43351451 lincRNA
ENSDART00000156626 (si:ch211-265m20.8-002) 43348261-43351311 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_00006S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139725-ENSG00000139718 CGP 9606 12:121777754-121832584
GeneTranscriptPositionBiotype
ENSG00000139725 (RHOF)
ras homolog family member F (in filopodia) 		ENST00000267205 (RHOF-001) 121777754-121794262 protein_coding
ENST00000535560 (RHOF-003) 121781080-121794355 protein_coding
ENST00000537171 (RHOF-002) 121780487-121794262 protein_coding
ENST00000537265 (RHOF-004) 121779418-121793360 protein_coding
ENST00000541657 (RHOF-006) 121780952-121802928 protein_coding
ENST00000545544 (RHOF-005) 121793151-121803403 processed_transcript
ENST00000546227 (RHOF-007) 121779608-121800677 protein_coding
ENSG00000188735 (TMEM120B)
transmembrane protein 120B 		ENST00000342607 (TMEM120B-001) 121712752-121778956 nonsense_mediated_decay
ENST00000411958 (TMEM120B-008) 121776284-121778356 processed_transcript
ENST00000416147 (TMEM120B-007) 121776263-121780750 processed_transcript
ENST00000449592 (TMEM120B-002) 121712795-121782062 protein_coding
ENST00000538055 (TMEM120B-004) 121776375-121783001 processed_transcript
ENST00000540377 (TMEM120B-006) 121752129-121776158 protein_coding
ENST00000541467 (TMEM120B-003) 121743623-121777789 protein_coding
ENSG00000274292 (RP11-347I19.7)
 ENST00000613093 (RP11-347I19.7-001) 121800797-121803403 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00006S_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029449-ENSMUSG00000038384 CGP 10090 5:123103044-123167435
GeneTranscriptPositionBiotype
ENSMUSG00000029449 (Rhof)
ras homolog gene family, member f 		ENSMUST00000031401 (Rhof-001) 123118178-123132692 protein_coding
ENSMUST00000160479 (Rhof-003) 123103044-123132461 nonsense_mediated_decay
ENSMUST00000162208 (Rhof-002) 123111167-123132429 processed_transcript
ENSMUST00000186469 (Rhof-201) 123103044-123132396 protein_coding
ENSMUSG00000038384 (Setd1b)
SET domain containing 1B 		ENSMUST00000056053 (Setd1b-201) 123142957-123167410 protein_coding
ENSMUST00000100731 (Setd1b-004) 123142193-123149981 retained_intron
ENSMUST00000162839 (Setd1b-003) 123163381-123164107 protein_coding
ENSMUST00000163030 (Setd1b-001) 123142193-123167435 protein_coding
ENSMUST00000173221 (Setd1b-005) 123162709-123165162 retained_intron
ENSMUST00000174836 (Setd1b-002) 123142193-123167410 protein_coding
ENSMUSG00000054434 (Tmem120b)
transmembrane protein 120B 		ENSMUST00000067505 (Tmem120b-001) 123076275-123117749 protein_coding
ENSMUST00000111619 (Tmem120b-002) 123076326-123117009 protein_coding
ENSMUST00000160344 (Tmem120b-007) 123076341-123115145 protein_coding
ENSMUST00000160489 (Tmem120b-005) 123076351-123104587 retained_intron
ENSMUST00000161049 (Tmem120b-006) 123099901-123115819 retained_intron
ENSMUST00000161059 (Tmem120b-004) 123076325-123115127 nonsense_mediated_decay
ENSMUST00000161660 (Tmem120b-008) 123068415-123114589 processed_transcript
ENSMUST00000162104 (Tmem120b-003) 123076370-123100368 retained_intron
ENSMUSG00000090086 (AI480526)
expressed sequence AI480526 		ENSMUST00000159072 (AI480526-003) 123133723-123138109 lincRNA
ENSMUST00000159637 (AI480526-007) 123136226-123141089 lincRNA
ENSMUST00000160099 (AI480526-001) 123137471-123140289 lincRNA
ENSMUST00000160227 (AI480526-002) 123134292-123139347 lincRNA
ENSMUST00000160255 (AI480526-006) 123134843-123141666 lincRNA
ENSMUST00000160321 (AI480526-005) 123134463-123141076 lincRNA
ENSMUST00000162697 (AI480526-004) 123138043-123141067 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006S_0001ENSDARG00000054389ENSDART00000076575ENSDART00000141222ENSDARG00000093535ENSDART00000141500ENSDART00000156057ENSDART00000156626CIL_00006S_0002ENSG00000139725ENST00000267205ENST00000535560ENST00000537171ENST00000537265ENST00000541657ENST00000545544ENST00000546227ENSG00000188735ENST00000342607ENST00000411958ENST00000416147ENST00000449592ENST00000538055ENST00000540377ENST00000541467ENSG00000274292ENST00000613093CIL_00006S_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006S_0001ENSDARG00000054389ENSDART00000076575ENSDART00000141222ENSDARG00000093535ENSDART00000141500ENSDART00000156626CIL_00006S_0002ENSG00000139725ENST00000267205ENST00000537171ENST00000546227ENSG00000188735ENST00000342607ENST00000449592ENST00000541467ENSG00000274292ENST00000613093CIL_00006S_0003ENSMUSG00000029449ENSMUST00000031401ENSMUST00000160479ENSMUST00000162208ENSMUST00000186469ENSMUSG00000038384ENSMUST00000056053ENSMUST00000100731ENSMUST00000163030ENSMUST00000173221ENSMUST00000174836ENSMUSG00000054434ENSMUST00000067505ENSMUST00000111619ENSMUST00000160344ENSMUST00000160489ENSMUST00000161049ENSMUST00000161059ENSMUSG00000090086ENSMUST00000159072ENSMUST00000159637ENSMUST00000160099ENSMUST00000160255
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054389 ENSDART00000076575 N/A N/A N/A 0.991±0.44 N/A N/A 2.313±0.22 10.488±0.00 0.100±0.00 N/A 1.460±0.00 N/A N/A N/A
ENSDART00000141222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A N/A N/A
ENSDARG00000093535 ENSDART00000141500 N/A N/A N/A 2.915±1.16 N/A N/A 1.431±1.03 1.313±0.32 N/A N/A 1.850±0.00 N/A N/A N/A
ENSDART00000156057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156626 N/A N/A N/A 2.193±0.15 N/A N/A 1.631±0.00 N/A 0.119±0.00 N/A 0.880±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139725 ENST00000267205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.850±0.00 N/A 4.571±0.00
ENST00000535560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537171 N/A N/A N/A N/A N/A 2.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546227 N/A N/A N/A N/A N/A N/A N/A 0.896±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000188735 ENST00000342607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.559±1.87 1.944±0.00 N/A
ENST00000411958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449592 0.576±0.00 2.876±0.00 0.665±0.00 0.247±0.00 4.801±0.00 0.637±0.15 0.696±0.00 0.745±0.54 0.462±0.00 1.453±0.00 1.547±0.00 2.017±0.42 0.501±0.05 N/A
ENST00000538055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541467 0.950±0.00 N/A N/A 0.901±0.00 N/A N/A 0.973±0.42 N/A 1.086±0.00 1.058±0.00 2.663±0.42 N/A 1.141±0.00 N/A
ENSG00000274292 ENST00000613093 0.713±0.00 N/A 3.304±0.00 1.964±1.06 3.385±0.00 1.323±0.31 0.658±0.00 0.740±0.00 1.939±0.00 1.830±0.00 N/A 1.574±0.00 N/A 3.987±1.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029449 ENSMUST00000031401 N/A N/A 0.502±0.00 9.278±0.00 11.866±3.13 19.947±1.57 N/A 4.391±0.31 0.534±0.41 3.842±0.24 0.900±0.00 1.743±0.49 1.491±0.93 0.350±0.09
ENSMUST00000160479 N/A 1.331±0.00 N/A N/A N/A N/A 0.295±0.00 N/A N/A N/A N/A N/A N/A 0.111±0.00
ENSMUST00000162208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00
ENSMUST00000186469 2.488±0.00 1.613±0.00 0.389±0.08 N/A 3.510±0.70 N/A 0.522±0.16 0.755±0.13 0.728±0.59 0.878±0.06 0.490±0.11 0.600±0.12 0.481±0.27 0.031±0.02
ENSMUSG00000038384 ENSMUST00000056053 1.516±0.14 2.404±0.60 N/A 1.458±0.00 1.167±0.57 1.373±0.68 0.439±0.05 1.147±0.39 0.885±0.45 3.144±0.04 0.398±0.06 1.413±0.84 5.907±4.86 2.880±1.47
ENSMUST00000100731 N/A N/A N/A N/A N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000162839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163030 1.030±0.00 4.939±1.29 N/A N/A 1.706±0.69 1.986±0.00 N/A 0.916±0.17 0.683±0.38 1.588±0.00 N/A 1.044±0.24 1.446±0.05 1.117±0.00
ENSMUST00000173221 N/A N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174836 0.655±0.00 N/A N/A N/A 2.696±1.02 2.690±0.29 N/A 0.524±0.12 N/A 2.814±0.79 N/A 1.870±0.71 N/A N/A
ENSMUSG00000054434 ENSMUST00000067505 35.220±15.49 6.162±3.09 2.341±0.72 N/A 21.447±3.62 N/A 2.122±0.75 3.840±0.49 4.761±5.00 3.633±0.59 4.592±0.53 2.796±1.27 4.746±3.01 0.171±0.10
ENSMUST00000111619 21.331±10.05 14.207±5.90 1.600±0.24 N/A 17.928±6.78 N/A 1.458±0.57 2.932±0.22 2.845±2.98 3.545±0.39 1.560±0.51 3.682±1.51 2.767±1.11 0.341±0.05
ENSMUST00000160344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.403±0.00
ENSMUST00000160489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.742±0.00 N/A
ENSMUST00000161049 N/A N/A N/A N/A 23.192±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.444±0.00 N/A N/A
ENSMUST00000161660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090086 ENSMUST00000159072 N/A 18.064±0.73 17.293±0.00 N/A 12.027±4.32 N/A N/A 11.944±3.64 9.137±3.83 N/A N/A N/A N/A 7.248±0.31
ENSMUST00000159637 N/A 15.073±2.36 N/A N/A N/A 14.744±0.00 N/A N/A 4.215±2.16 N/A N/A N/A N/A 5.433±0.00
ENSMUST00000160099 N/A N/A N/A N/A N/A N/A N/A N/A 4.307±1.37 N/A N/A N/A N/A N/A
ENSMUST00000160227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.420±0.00
ENSMUST00000160321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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