C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji, AT rich interactive domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038518 Jarid2 10090 + 13:44729474-44921643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044608 Jarid2-002 44730823-44920995 protein_coding
  ENSMUST00000172581 Jarid2-012 44734040-44874314 processed_transcript
  ENSMUST00000172708 Jarid2-016 44730859-44874351 processed_transcript
  ENSMUST00000172830 Jarid2-015 44729795-44823510 protein_coding
  ENSMUST00000172924 Jarid2-010 44731859-44874342 processed_transcript
  ENSMUST00000172977 Jarid2-014 44731598-44884748 nonsense_mediated_decay
  ENSMUST00000173003 Jarid2-008 44840783-44896481 nonsense_mediated_decay
  ENSMUST00000173246 Jarid2-001 44731271-44921643 protein_coding
  ENSMUST00000173367 Jarid2-007 44730838-44903258 protein_coding
  ENSMUST00000173704 Jarid2-003 44730774-44920108 protein_coding
  ENSMUST00000173906 Jarid2-006 44840691-44914319 protein_coding
  ENSMUST00000174068 Jarid2-011 44729535-44848340 protein_coding
  ENSMUST00000174086 Jarid2-013 44731287-44823403 protein_coding
  ENSMUST00000174394 Jarid2-009 44729474-44731574 processed_transcript
  ENSMUST00000174557 Jarid2-004 44731368-44885028 retained_intron
  ENSMUST00000174683 Jarid2-005 44731370-44921640 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044608ENSMUST00000172581ENSMUST00000173246ENSMUST00000173367ENSMUST00000173704ENSMUST00000173906ENSMUST00000174683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044608 N/A 0.452±0.00 N/A 2.740±0.53 1.431±0.00 1.914±0.00 N/A N/A 1.483±0.42 1.085±0.00 N/A 3.298±1.40 3.060±0.31 1.480±0.26
ENSMUST00000172581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.795±0.00 42.426±0.00
ENSMUST00000173246 3.701±0.64 1.171±0.51 7.352±0.18 10.020±0.78 2.773±0.65 2.451±0.81 1.689±0.59 3.487±1.43 2.458±1.86 2.552±0.72 3.318±0.60 3.114±1.74 6.734±0.51 1.545±0.71
ENSMUST00000173367 N/A 1.450±0.23 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173704 3.209±1.12 0.741±0.00 N/A 1.854±0.00 2.274±0.75 2.177±1.13 1.158±0.29 1.917±0.60 0.970±0.63 0.802±0.12 1.761±0.00 4.208±1.27 5.870±1.90 4.806±1.30
ENSMUST00000173906 2.203±0.00 2.753±0.51 N/A N/A 2.731±0.16 2.261±0.66 N/A 1.971±0.00 0.377±0.05 1.272±0.00 N/A 2.697±0.72 N/A 2.263±0.00
ENSMUST00000174683 0.618±0.03 N/A N/A 1.211±0.50 0.843±0.02 0.899±0.20 0.326±0.02 0.519±0.03 N/A 0.509±0.12 N/A 1.004±0.18 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I7 CIL_0003I7_0002 CGP 13:43785107-44921643
CIL_0008HW CIL_0008HW_0002 VISTA 13:44611410-45213085
CIL_0001BY CIL_0001BY_0004 CGP 13:44729474-45002096

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001889 IMP liver development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008285 IMP negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0031061 IDA negative regulation of histone methylation
GO:0035097 IDA histone methyltransferase complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042127 IMP regulation of cell proliferation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048536 IMP spleen development
GO:0048538 IMP thymus development
GO:0048863 IMP stem cell differentiation
GO:0051574 IDA positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060925 jarid2a jumonji, AT rich interactive domain 2a protein_coding Danio_rerio
ENSDARG00000062268 jarid2b jumonji, AT rich interactive domain 2b protein_coding Danio_rerio
ENSG00000008083 JARID2 jumonji, AT rich interactive domain 2 protein_coding Homo_sapiens

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