C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji, AT rich interactive domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000008083 JARID2 9606 + 6:15246296-15522040 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341776 JARID2-001 15246296-15522021 protein_coding
  ENST00000397311 JARID2-201 15248855-15522040 protein_coding
  ENST00000474854 JARID2-002 15501358-15508393 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341776ENST00000397311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341776 1.322±0.00 0.857±0.00 0.270±0.00 2.108±1.39 1.935±0.37 1.881±0.00 1.078±0.40 0.286±0.00 1.074±0.90 2.139±0.00 1.173±0.00 1.169±0.58 2.805±1.12 4.683±1.33
ENST00000397311 1.252±0.00 1.742±0.00 N/A 0.667±0.12 0.725±0.00 1.441±0.00 N/A 1.653±0.00 0.925±0.00 1.351±0.00 1.421±0.00 1.051±0.50 0.831±0.30 7.332±4.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I7 CIL_0003I7_0001 CGP 6:14117256-15522040
CIL_0008HW CIL_0008HW_0001 VISTA 6:15208612-15811107
CIL_0001BY CIL_0001BY_0003 CGP 6:15246296-15663058

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001889 IEA liver development
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007417 TAS central nervous system development
GO:0008285 IEA negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0031061 ISS negative regulation of histone methylation
GO:0035097 ISS histone methyltransferase complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042127 IEA regulation of cell proliferation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048536 IEA spleen development
GO:0048538 IEA thymus development
GO:0048863 ISS stem cell differentiation
GO:0051574 ISS positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060925 jarid2a jumonji, AT rich interactive domain 2a protein_coding Danio_rerio
ENSDARG00000062268 jarid2b jumonji, AT rich interactive domain 2b protein_coding Danio_rerio
ENSMUSG00000038518 Jarid2 jumonji, AT rich interactive domain 2 protein_coding Mus_musculus

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