C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji, AT rich interactive domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173704 Jarid2-003 ENSMUSG00000038518 10090 + 13:44730774-44920108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173704
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173704 3.209±1.12 0.741±0.00 1.854±0.00 2.274±0.75 2.177±1.13 1.158±0.29 1.917±0.60 0.970±0.63 0.802±0.12 1.761±0.00 4.208±1.27 5.870±1.90 4.806±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I7 CIL_0003I7_0002 CGP 13:43785107-44921643
CIL_0008HW CIL_0008HW_0002 VISTA 13:44611410-45213085
CIL_0001BY CIL_0001BY_0004 CGP 13:44729474-45002096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001889 IMP liver development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008285 IMP negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0031061 IDA negative regulation of histone methylation
GO:0035097 IDA histone methyltransferase complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042127 IMP regulation of cell proliferation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048536 IMP spleen development
GO:0048538 IMP thymus development
GO:0048863 IMP stem cell differentiation
GO:0051574 IDA positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089836 jarid2b-201 protein_coding Danio_rerio 0 676
ENSDART00000147627 jarid2b-001 protein_coding Danio_rerio 0 676
ENSDART00000086333 jarid2a-001 protein_coding Danio_rerio 0 425
ENST00000341776 JARID2-001 protein_coding Homo_sapiens 0 5044
ENST00000397311 JARID2-201 protein_coding Homo_sapiens 0 4669
ENST00000474854 JARID2-002 processed_transcript Homo_sapiens 0 363

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