C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FCH and double SH3 domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038524 Fchsd1 10090 - 18:37957431-37969774 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043437 Fchsd1-001 37957434-37969774 protein_coding
  ENSMUST00000163131 Fchsd1-005 37967639-37969769 protein_coding
  ENSMUST00000164222 Fchsd1-003 37967805-37969769 nonsense_mediated_decay
  ENSMUST00000165643 Fchsd1-002 37957431-37960471 retained_intron
  ENSMUST00000166148 Fchsd1-009 37965658-37969769 protein_coding
  ENSMUST00000166727 Fchsd1-010 37962964-37964061 retained_intron
  ENSMUST00000166973 Fchsd1-006 37965696-37967749 retained_intron
  ENSMUST00000168136 Fchsd1-007 37967640-37969757 retained_intron
  ENSMUST00000168816 Fchsd1-008 37967618-37968052 retained_intron
  ENSMUST00000171253 Fchsd1-004 37967833-37969528 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043437ENSMUST00000165643ENSMUST00000166973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043437 2.026±0.40 1.197±0.23 3.504±0.52 10.221±1.50 2.710±0.84 3.411±1.24 0.483±0.29 2.295±0.50 0.396±0.13 2.397±0.64 0.235±0.07 3.425±1.03 1.481±0.47 1.508±0.45
ENSMUST00000165643 N/A 0.740±0.00 N/A 5.704±0.33 1.321±0.15 N/A N/A N/A 0.281±0.00 N/A 0.096±0.02 0.590±0.10 N/A N/A
ENSMUST00000166973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QE CIL_0006QE_0002 CGP 18:37935844-37959179
CIL_0006QB CIL_0006QB_0002 CGP 18:37955079-37969774
CIL_0002P1 CIL_0002P1_0002 CGP 18:37957431-37997574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000197948 FCHSD1 FCH and double SH3 domains 1 protein_coding Homo_sapiens

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