C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006QE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171720-ENSG00000164620 CGP 9606 5:141620876-141641077
GeneTranscriptPositionBiotype
ENSG00000164620 (RELL2)
RELT-like 2 		ENST00000297164 (RELL2-001) 141637026-141641077 protein_coding
ENST00000444782 (RELL2-201) 141636950-141641063 protein_coding
ENST00000517794 (RELL2-006) 141637437-141639629 processed_transcript
ENST00000518025 (RELL2-002) 141637005-141641064 processed_transcript
ENST00000518856 (RELL2-005) 141637442-141641053 protein_coding
ENST00000520674 (RELL2-003) 141636950-141641063 processed_transcript
ENST00000521367 (RELL2-004) 141637012-141641018 protein_coding
ENSG00000171720 (HDAC3)
histone deacetylase 3 		ENST00000305264 (HDAC3-001) 141620876-141636870 protein_coding
ENST00000459727 (HDAC3-012) 141621485-141628562 processed_transcript
ENST00000467533 (HDAC3-005) 141625701-141629972 retained_intron
ENST00000469207 (HDAC3-013) 141620925-141626070 processed_transcript
ENST00000469550 (HDAC3-014) 141620876-141635164 retained_intron
ENST00000471968 (HDAC3-004) 141629266-141634856 retained_intron
ENST00000475549 (HDAC3-010) 141626026-141626444 retained_intron
ENST00000476739 (HDAC3-008) 141627899-141629224 retained_intron
ENST00000486618 (HDAC3-009) 141625208-141626485 retained_intron
ENST00000490808 (HDAC3-006) 141628605-141629742 retained_intron
ENST00000491581 (HDAC3-011) 141624862-141627936 retained_intron
ENST00000492407 (HDAC3-007) 141625750-141629258 retained_intron
ENST00000492506 (HDAC3-002) 141635909-141636843 retained_intron
ENST00000495485 (HDAC3-003) 141628559-141636825 retained_intron
ENST00000519474 (HDAC3-015) 141627892-141636838 nonsense_mediated_decay
ENST00000523088 (HDAC3-016) 141626233-141636833 protein_coding
ENSG00000197948 (FCHSD1)
FCH and double SH3 domains 1 		ENST00000435817 (FCHSD1-001) 141639302-141651419 protein_coding
ENST00000518160 (FCHSD1-008) 141641209-141642704 processed_transcript
ENST00000518499 (FCHSD1-011) 141644630-141646364 protein_coding
ENST00000519800 (FCHSD1-002) 141647884-141651387 protein_coding
ENST00000520747 (FCHSD1-006) 141639303-141642621 retained_intron
ENST00000522126 (FCHSD1-003) 141640982-141651117 nonsense_mediated_decay
ENST00000522386 (FCHSD1-009) 141646672-141647831 processed_transcript
ENST00000522763 (FCHSD1-010) 141646508-141647529 processed_transcript
ENST00000522783 (FCHSD1-005) 141640987-141651376 protein_coding
ENST00000523856 (FCHSD1-004) 141639308-141647483 processed_transcript
CIL_0006QE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024454-ENSMUSG00000044024 CGP 10090 18:37935844-37959179
GeneTranscriptPositionBiotype
ENSMUSG00000024454 (Hdac3)
histone deacetylase 3 		ENSMUST00000043498 (Hdac3-001) 37936972-37954988 protein_coding
ENSMUST00000143660 (Hdac3-003) 37935844-37945564 retained_intron
ENSMUST00000144471 (Hdac3-004) 37936972-37944075 retained_intron
ENSMUST00000153945 (Hdac3-002) 37936978-37954931 processed_transcript
ENSMUSG00000038524 (Fchsd1)
FCH and double SH3 domains 1 		ENSMUST00000043437 (Fchsd1-001) 37957434-37969774 protein_coding
ENSMUST00000163131 (Fchsd1-005) 37967639-37969769 protein_coding
ENSMUST00000164222 (Fchsd1-003) 37967805-37969769 nonsense_mediated_decay
ENSMUST00000165643 (Fchsd1-002) 37957431-37960471 retained_intron
ENSMUST00000166148 (Fchsd1-009) 37965658-37969769 protein_coding
ENSMUST00000166727 (Fchsd1-010) 37962964-37964061 retained_intron
ENSMUST00000166973 (Fchsd1-006) 37965696-37967749 retained_intron
ENSMUST00000168136 (Fchsd1-007) 37967640-37969757 retained_intron
ENSMUST00000168816 (Fchsd1-008) 37967618-37968052 retained_intron
ENSMUST00000171253 (Fchsd1-004) 37967833-37969528 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QE_0001ENSG00000164620ENST00000297164ENST00000444782ENST00000517794ENST00000518025ENST00000518856ENST00000520674ENST00000521367ENSG00000171720ENST00000305264ENST00000459727ENST00000467533ENST00000469207ENST00000469550ENST00000471968ENST00000475549ENST00000476739ENST00000486618ENST00000490808ENST00000491581ENST00000492407ENST00000492506ENST00000495485ENST00000519474ENST00000523088ENSG00000197948ENST00000435817ENST00000518160ENST00000518499ENST00000519800ENST00000520747ENST00000522126ENST00000522386ENST00000522763ENST00000522783ENST00000523856CIL_0006QE_0002ENSMUSG00000024454ENSMUST00000043498ENSMUST00000143660ENSMUST00000144471ENSMUST00000153945ENSMUSG00000038524ENSMUST00000043437ENSMUST00000163131ENSMUST00000164222ENSMUST00000165643ENSMUST00000166148ENSMUST00000166727ENSMUST00000166973ENSMUST00000168136ENSMUST00000168816ENSMUST00000171253
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QE_0001ENSG00000164620ENST00000297164ENST00000444782ENST00000517794ENST00000520674ENSG00000171720ENST00000305264ENST00000459727ENST00000469207ENST00000469550ENST00000491581ENST00000492506ENSG00000197948ENST00000435817ENST00000519800ENST00000520747ENST00000522126ENST00000522386ENST00000522783ENST00000523856CIL_0006QE_0002ENSMUSG00000024454ENSMUST00000043498ENSMUST00000144471ENSMUST00000153945ENSMUSG00000038524ENSMUST00000043437ENSMUST00000165643ENSMUST00000166973
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164620 ENST00000297164 N/A N/A N/A 2.696±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444782 N/A N/A N/A 1.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517794 N/A N/A 0.435±0.00 4.849±2.90 N/A N/A N/A N/A N/A N/A N/A 8.862±0.00 5.717±0.00 14.941±0.00
ENST00000518025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520674 N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A N/A
ENST00000521367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171720 ENST00000305264 8.265±0.00 9.141±0.00 N/A 8.699±4.23 5.001±2.04 2.935±1.39 7.122±5.46 9.078±0.98 7.507±4.53 5.789±4.13 7.042±6.50 12.916±9.10 16.216±8.59 9.074±1.92
ENST00000459727 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.976±0.00 N/A 38.043±0.00 34.826±0.00 42.920±0.00
ENST00000467533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.240±1.74 19.322±0.00 15.372±0.00
ENST00000469550 2.006±0.00 6.170±0.00 N/A N/A 1.500±0.00 1.181±0.28 N/A N/A N/A N/A N/A 1.457±0.00 N/A N/A
ENST00000471968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491581 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.213±0.00 1.477±0.00 N/A N/A N/A
ENST00000492407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492506 N/A N/A N/A N/A N/A N/A N/A N/A 3.047±0.00 N/A N/A N/A N/A N/A
ENST00000495485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197948 ENST00000435817 1.134±0.00 2.354±0.00 N/A N/A 0.291±0.00 0.459±0.00 0.205±0.00 1.033±0.00 0.189±0.00 2.143±0.00 0.096±0.00 2.509±1.23 2.306±0.00 1.773±0.55
ENST00000518160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519800 N/A N/A 0.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520747 N/A 1.680±0.00 N/A 1.462±0.16 N/A 0.367±0.00 0.059±0.00 N/A 0.089±0.00 N/A 0.147±0.00 1.350±0.37 N/A N/A
ENST00000522126 0.866±0.00 N/A N/A N/A N/A 0.970±0.00 N/A N/A 0.667±0.00 0.500±0.00 N/A 1.911±0.32 1.965±0.75 2.959±0.00
ENST00000522386 N/A N/A N/A N/A 6.192±0.00 2.952±0.00 N/A N/A 1.387±0.00 2.937±0.00 N/A N/A N/A N/A
ENST00000522763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522783 N/A N/A N/A N/A 0.559±0.00 0.578±0.00 N/A N/A N/A N/A 0.096±0.00 3.316±0.00 1.822±0.49 2.076±0.00
ENST00000523856 N/A 3.343±0.00 N/A 1.064±0.52 0.933±0.00 0.417±0.00 0.141±0.00 N/A 0.048±0.00 0.288±0.00 N/A 1.764±0.59 N/A 0.615±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024454 ENSMUST00000043498 13.498±0.61 25.830±2.04 13.131±2.85 36.488±20.26 37.720±16.93 8.230±1.98 8.148±1.37 9.091±0.85 8.387±4.11 7.035±2.76 14.939±1.89 22.906±15.04 21.668±8.99 7.995±3.81
ENSMUST00000143660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144471 N/A 10.590±1.44 6.859±0.92 7.079±3.75 10.017±2.22 6.113±0.25 3.666±0.40 N/A 4.039±0.18 4.971±0.69 4.062±0.00 9.393±3.28 4.560±0.00 N/A
ENSMUST00000153945 N/A N/A N/A 20.827±0.00 N/A N/A N/A N/A N/A N/A N/A 21.588±0.00 20.514±1.87 6.076±0.00
ENSMUSG00000038524 ENSMUST00000043437 2.026±0.40 1.197±0.23 3.504±0.52 10.221±1.50 2.710±0.84 3.411±1.24 0.483±0.29 2.295±0.50 0.396±0.13 2.397±0.64 0.235±0.07 3.425±1.03 1.481±0.47 1.508±0.45
ENSMUST00000163131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165643 N/A 0.740±0.00 N/A 5.704±0.33 1.321±0.15 N/A N/A N/A 0.281±0.00 N/A 0.096±0.02 0.590±0.10 N/A N/A
ENSMUST00000166148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A
ENSMUST00000168136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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