C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002P1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197948-ENSG00000120318 CGP 9606 5:141639302-141682221
GeneTranscriptPositionBiotype
ENSG00000120318 (ARAP3)
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 		ENST00000239440 (ARAP3-001) 141653401-141682221 protein_coding
ENST00000504448 (ARAP3-005) 141672267-141680831 protein_coding
ENST00000508305 (ARAP3-002) 141653401-141682203 protein_coding
ENST00000512390 (ARAP3-003) 141653408-141666744 processed_transcript
ENST00000513878 (ARAP3-004) 141653791-141673160 protein_coding
ENST00000524066 (ARAP3-008) 141672768-141673387 processed_transcript
ENSG00000164620 (RELL2)
RELT-like 2 		ENST00000297164 (RELL2-001) 141637026-141641077 protein_coding
ENST00000444782 (RELL2-201) 141636950-141641063 protein_coding
ENST00000517794 (RELL2-006) 141637437-141639629 processed_transcript
ENST00000518025 (RELL2-002) 141637005-141641064 processed_transcript
ENST00000518856 (RELL2-005) 141637442-141641053 protein_coding
ENST00000520674 (RELL2-003) 141636950-141641063 processed_transcript
ENST00000521367 (RELL2-004) 141637012-141641018 protein_coding
ENSG00000197948 (FCHSD1)
FCH and double SH3 domains 1 		ENST00000435817 (FCHSD1-001) 141639302-141651419 protein_coding
ENST00000518160 (FCHSD1-008) 141641209-141642704 processed_transcript
ENST00000518499 (FCHSD1-011) 141644630-141646364 protein_coding
ENST00000519800 (FCHSD1-002) 141647884-141651387 protein_coding
ENST00000520747 (FCHSD1-006) 141639303-141642621 retained_intron
ENST00000522126 (FCHSD1-003) 141640982-141651117 nonsense_mediated_decay
ENST00000522386 (FCHSD1-009) 141646672-141647831 processed_transcript
ENST00000522763 (FCHSD1-010) 141646508-141647529 processed_transcript
ENST00000522783 (FCHSD1-005) 141640987-141651376 protein_coding
ENST00000523856 (FCHSD1-004) 141639308-141647483 processed_transcript
CIL_0002P1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038524-ENSMUSG00000024451 CGP 10090 18:37957431-37997574
GeneTranscriptPositionBiotype
ENSMUSG00000024451 (Arap3)
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 		ENSMUST00000042944 (Arap3-201) 37972624-37997574 protein_coding
ENSMUSG00000038524 (Fchsd1)
FCH and double SH3 domains 1 		ENSMUST00000043437 (Fchsd1-001) 37957434-37969774 protein_coding
ENSMUST00000163131 (Fchsd1-005) 37967639-37969769 protein_coding
ENSMUST00000164222 (Fchsd1-003) 37967805-37969769 nonsense_mediated_decay
ENSMUST00000165643 (Fchsd1-002) 37957431-37960471 retained_intron
ENSMUST00000166148 (Fchsd1-009) 37965658-37969769 protein_coding
ENSMUST00000166727 (Fchsd1-010) 37962964-37964061 retained_intron
ENSMUST00000166973 (Fchsd1-006) 37965696-37967749 retained_intron
ENSMUST00000168136 (Fchsd1-007) 37967640-37969757 retained_intron
ENSMUST00000168816 (Fchsd1-008) 37967618-37968052 retained_intron
ENSMUST00000171253 (Fchsd1-004) 37967833-37969528 retained_intron
ENSMUSG00000098608 (Mir6981)
microRNA 6981 		ENSMUST00000184293 (Mir6981-201) 37974503-37974617 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P1_0001ENSG00000120318ENST00000239440ENST00000504448ENST00000508305ENST00000512390ENST00000513878ENST00000524066ENSG00000164620ENST00000297164ENST00000444782ENST00000517794ENST00000518025ENST00000518856ENST00000520674ENST00000521367ENSG00000197948ENST00000435817ENST00000518160ENST00000518499ENST00000519800ENST00000520747ENST00000522126ENST00000522386ENST00000522763ENST00000522783ENST00000523856CIL_0002P1_0002ENSMUSG00000024451ENSMUST00000042944ENSMUSG00000038524ENSMUST00000043437ENSMUST00000163131ENSMUST00000164222ENSMUST00000165643ENSMUST00000166148ENSMUST00000166727ENSMUST00000166973ENSMUST00000168136ENSMUST00000168816ENSMUST00000171253ENSMUSG00000098608ENSMUST00000184293
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P1_0001ENSG00000120318ENST00000239440ENST00000504448ENST00000508305ENST00000512390ENST00000513878ENSG00000164620ENST00000297164ENST00000444782ENST00000517794ENST00000520674ENSG00000197948ENST00000435817ENST00000519800ENST00000520747ENST00000522126ENST00000522386ENST00000522783ENST00000523856CIL_0002P1_0002ENSMUSG00000024451ENSMUST00000042944ENSMUSG00000038524ENSMUST00000043437ENSMUST00000165643ENSMUST00000166973ENSMUSG00000098608ENSMUST00000184293
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120318 ENST00000239440 3.334±0.00 2.065±0.00 N/A N/A 2.267±0.00 2.703±0.00 1.642±1.46 2.224±0.00 N/A 4.025±0.00 N/A 2.380±0.83 1.758±0.62 0.499±0.00
ENST00000504448 N/A N/A N/A 0.109±0.00 N/A 0.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508305 N/A 1.027±0.00 N/A N/A N/A N/A 1.700±0.00 N/A 0.500±0.00 N/A N/A N/A N/A N/A
ENST00000512390 N/A 1.793±0.00 0.296±0.00 0.103±0.00 1.794±0.00 2.140±0.00 N/A N/A 0.250±0.02 N/A N/A 2.203±1.15 2.796±0.91 0.365±0.00
ENST00000513878 3.121±0.00 N/A N/A N/A 2.046±0.00 N/A N/A N/A N/A 3.159±0.00 N/A 2.758±0.00 N/A 0.908±0.02
ENST00000524066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164620 ENST00000297164 N/A N/A N/A 2.696±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444782 N/A N/A N/A 1.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517794 N/A N/A 0.435±0.00 4.849±2.90 N/A N/A N/A N/A N/A N/A N/A 8.862±0.00 5.717±0.00 14.941±0.00
ENST00000518025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520674 N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A N/A
ENST00000521367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197948 ENST00000435817 1.134±0.00 2.354±0.00 N/A N/A 0.291±0.00 0.459±0.00 0.205±0.00 1.033±0.00 0.189±0.00 2.143±0.00 0.096±0.00 2.509±1.23 2.306±0.00 1.773±0.55
ENST00000518160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519800 N/A N/A 0.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520747 N/A 1.680±0.00 N/A 1.462±0.16 N/A 0.367±0.00 0.059±0.00 N/A 0.089±0.00 N/A 0.147±0.00 1.350±0.37 N/A N/A
ENST00000522126 0.866±0.00 N/A N/A N/A N/A 0.970±0.00 N/A N/A 0.667±0.00 0.500±0.00 N/A 1.911±0.32 1.965±0.75 2.959±0.00
ENST00000522386 N/A N/A N/A N/A 6.192±0.00 2.952±0.00 N/A N/A 1.387±0.00 2.937±0.00 N/A N/A N/A N/A
ENST00000522763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522783 N/A N/A N/A N/A 0.559±0.00 0.578±0.00 N/A N/A N/A N/A 0.096±0.00 3.316±0.00 1.822±0.49 2.076±0.00
ENST00000523856 N/A 3.343±0.00 N/A 1.064±0.52 0.933±0.00 0.417±0.00 0.141±0.00 N/A 0.048±0.00 0.288±0.00 N/A 1.764±0.59 N/A 0.615±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024451 ENSMUST00000042944 10.201±6.25 5.830±0.99 1.559±0.09 1.542±0.85 7.496±0.69 2.631±1.17 10.206±2.12 4.445±1.49 3.012±1.53 41.175±2.79 3.514±0.63 2.849±1.40 5.646±4.84 0.233±0.10
ENSMUSG00000038524 ENSMUST00000043437 2.026±0.40 1.197±0.23 3.504±0.52 10.221±1.50 2.710±0.84 3.411±1.24 0.483±0.29 2.295±0.50 0.396±0.13 2.397±0.64 0.235±0.07 3.425±1.03 1.481±0.47 1.508±0.45
ENSMUST00000163131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165643 N/A 0.740±0.00 N/A 5.704±0.33 1.321±0.15 N/A N/A N/A 0.281±0.00 N/A 0.096±0.02 0.590±0.10 N/A N/A
ENSMUST00000166148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A
ENSMUST00000168136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098608 ENSMUST00000184293 1711.590±198.82 N/A N/A N/A 1972.715±171.62 N/A 1434.795±127.73 3391.550±0.00 14.801±0.00 N/A 7.344±0.00 54.861±0.00 40.939±0.00 N/A

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