C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 280D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038535 Zfp280d 10090 + 9:72274860-72363777 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000098576 Zfp280d-011 72274879-72363777 protein_coding
  ENSMUST00000183400 Zfp280d-012 72274981-72299175 retained_intron
  ENSMUST00000183410 Zfp280d-020 72275004-72363761 protein_coding
  ENSMUST00000183459 Zfp280d-009 72331081-72334584 retained_intron
  ENSMUST00000183468 Zfp280d-019 72360202-72363627 protein_coding
  ENSMUST00000183545 Zfp280d-016 72307147-72309253 retained_intron
  ENSMUST00000183608 Zfp280d-017 72312101-72313678 processed_transcript
  ENSMUST00000183801 Zfp280d-021 72295288-72363516 nonsense_mediated_decay
  ENSMUST00000184019 Zfp280d-013 72331127-72361947 protein_coding
  ENSMUST00000184025 Zfp280d-008 72323056-72329308 retained_intron
  ENSMUST00000184036 Zfp280d-001 72274860-72362891 protein_coding
  ENSMUST00000184053 Zfp280d-010 72274907-72363498 nonsense_mediated_decay
  ENSMUST00000184141 Zfp280d-015 72328248-72330336 retained_intron
  ENSMUST00000184216 Zfp280d-014 72338748-72362668 protein_coding
  ENSMUST00000184248 Zfp280d-018 72312663-72319756 retained_intron
  ENSMUST00000184399 Zfp280d-002 72274906-72362411 nonsense_mediated_decay
  ENSMUST00000184517 Zfp280d-003 72274879-72341093 protein_coding
  ENSMUST00000184639 Zfp280d-005 72274979-72287421 processed_transcript
  ENSMUST00000184786 Zfp280d-006 72298727-72323049 nonsense_mediated_decay
  ENSMUST00000184968 Zfp280d-004 72274915-72288733 processed_transcript
  ENSMUST00000185020 Zfp280d-007 72312141-72324108 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098576ENSMUST00000183400ENSMUST00000183410ENSMUST00000183468ENSMUST00000183801ENSMUST00000184036ENSMUST00000184399ENSMUST00000184517ENSMUST00000184786ENSMUST00000184968ENSMUST00000185020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098576 1.197±0.49 N/A 3.692±0.36 6.697±0.41 1.019±0.25 0.747±0.00 0.720±0.20 1.276±0.19 1.873±1.24 1.673±0.19 1.598±0.33 2.102±0.98 2.530±0.34 1.358±0.36
ENSMUST00000183400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.491±0.00
ENSMUST00000183410 0.575±0.00 0.765±0.00 N/A 4.554±0.00 1.077±0.03 0.533±0.06 0.758±0.14 0.617±0.02 1.214±0.69 1.423±0.00 0.576±0.03 1.779±0.54 1.832±0.85 N/A
ENSMUST00000183468 N/A N/A 4.530±0.54 9.606±0.00 N/A N/A N/A N/A 2.325±1.01 N/A 1.189±0.16 4.924±0.00 2.880±0.47 N/A
ENSMUST00000183801 N/A 0.628±0.16 N/A N/A N/A 0.384±0.00 0.320±0.00 N/A 0.319±0.00 N/A N/A 0.790±0.00 N/A 1.066±0.31
ENSMUST00000184036 N/A 0.709±0.00 N/A 4.045±0.00 1.331±0.38 N/A N/A N/A N/A N/A N/A 3.312±0.00 1.442±0.19 3.223±0.00
ENSMUST00000184399 N/A N/A N/A N/A 0.940±0.00 0.793±0.00 0.695±0.00 N/A N/A N/A N/A N/A 1.555±0.00 N/A
ENSMUST00000184517 N/A 0.630±0.00 N/A N/A 2.005±0.00 0.571±0.18 N/A N/A 0.284±0.00 1.501±0.27 N/A 1.322±0.27 N/A 1.425±0.25
ENSMUST00000184786 N/A 4.771±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184968 N/A N/A N/A N/A 0.981±0.00 0.384±0.00 N/A N/A 0.279±0.00 N/A N/A 0.890±0.00 N/A N/A
ENSMUST00000185020 3.477±0.63 3.275±1.01 N/A N/A 2.510±0.78 1.738±0.48 N/A 2.727±0.44 N/A N/A N/A 4.753±0.97 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077013 znf280d zinc finger protein 280D protein_coding Danio_rerio
ENSG00000137871 ZNF280D zinc finger protein 280D protein_coding Homo_sapiens

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