C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004714-ENSDARG00000077013 CGP 7955 7:53971789-54206632
GeneTranscriptPositionBiotype
ENSDARG00000004714 (tcf12)
transcription factor 12 		ENSDART00000009938 (tcf12-002) 53971789-54013591 protein_coding
ENSDART00000073766 (tcf12-201) 53973676-54164943 protein_coding
ENSDART00000131282 (tcf12-001) 53976381-54164931 protein_coding
ENSDART00000136745 (tcf12-005) 54159811-54164839 protein_coding
ENSDART00000138263 (tcf12-003) 53999925-54013575 protein_coding
ENSDART00000140338 (tcf12-004) 54002236-54002763 processed_transcript
ENSDARG00000077013 (znf280d)
zinc finger protein 280D 		ENSDART00000110906 (znf280d-201) 54171798-54206632 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004OY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032228-ENSMUSG00000038535 CGP 10090 9:71842688-72363777
GeneTranscriptPositionBiotype
ENSMUSG00000032228 (Tcf12)
transcription factor 12 		ENSMUST00000034755 (Tcf12-006) 71844268-72111821 protein_coding
ENSMUST00000183404 (Tcf12-001) 71842688-72111847 protein_coding
ENSMUST00000183492 (Tcf12-008) 71883743-72111772 protein_coding
ENSMUST00000183594 (Tcf12-020) 71885215-72111792 nonsense_mediated_decay
ENSMUST00000183647 (Tcf12-016) 71883122-72000474 nonsense_mediated_decay
ENSMUST00000183784 (Tcf12-014) 71868224-71884711 processed_transcript
ENSMUST00000183918 (Tcf12-010) 71844273-71896396 protein_coding
ENSMUST00000183992 (Tcf12-003) 71858587-72111202 protein_coding
ENSMUST00000184029 (Tcf12-012) 71884437-71922710 protein_coding
ENSMUST00000184072 (Tcf12-021) 71875989-72109724 protein_coding
ENSMUST00000184107 (Tcf12-015) 71883764-72111600 nonsense_mediated_decay
ENSMUST00000184196 (Tcf12-002) 71942445-72111847 retained_intron
ENSMUST00000184378 (Tcf12-013) 71875989-71895985 nonsense_mediated_decay
ENSMUST00000184416 (Tcf12-017) 71882732-72000476 nonsense_mediated_decay
ENSMUST00000184448 (Tcf12-011) 71849891-71896089 protein_coding
ENSMUST00000184523 (Tcf12-005) 71849894-72111812 protein_coding
ENSMUST00000184770 (Tcf12-009) 71844252-71896086 retained_intron
ENSMUST00000184783 (Tcf12-019) 71845512-72111871 protein_coding
ENSMUST00000184806 (Tcf12-004) 72106139-72110481 retained_intron
ENSMUST00000184867 (Tcf12-007) 71844277-72111807 nonsense_mediated_decay
ENSMUST00000185117 (Tcf12-018) 71844723-72111651 protein_coding
ENSMUSG00000038535 (Zfp280d)
zinc finger protein 280D 		ENSMUST00000098576 (Zfp280d-011) 72274879-72363777 protein_coding
ENSMUST00000183400 (Zfp280d-012) 72274981-72299175 retained_intron
ENSMUST00000183410 (Zfp280d-020) 72275004-72363761 protein_coding
ENSMUST00000183459 (Zfp280d-009) 72331081-72334584 retained_intron
ENSMUST00000183468 (Zfp280d-019) 72360202-72363627 protein_coding
ENSMUST00000183545 (Zfp280d-016) 72307147-72309253 retained_intron
ENSMUST00000183608 (Zfp280d-017) 72312101-72313678 processed_transcript
ENSMUST00000183801 (Zfp280d-021) 72295288-72363516 nonsense_mediated_decay
ENSMUST00000184019 (Zfp280d-013) 72331127-72361947 protein_coding
ENSMUST00000184025 (Zfp280d-008) 72323056-72329308 retained_intron
ENSMUST00000184036 (Zfp280d-001) 72274860-72362891 protein_coding
ENSMUST00000184053 (Zfp280d-010) 72274907-72363498 nonsense_mediated_decay
ENSMUST00000184141 (Zfp280d-015) 72328248-72330336 retained_intron
ENSMUST00000184216 (Zfp280d-014) 72338748-72362668 protein_coding
ENSMUST00000184248 (Zfp280d-018) 72312663-72319756 retained_intron
ENSMUST00000184399 (Zfp280d-002) 72274906-72362411 nonsense_mediated_decay
ENSMUST00000184517 (Zfp280d-003) 72274879-72341093 protein_coding
ENSMUST00000184639 (Zfp280d-005) 72274979-72287421 processed_transcript
ENSMUST00000184786 (Zfp280d-006) 72298727-72323049 nonsense_mediated_decay
ENSMUST00000184968 (Zfp280d-004) 72274915-72288733 processed_transcript
ENSMUST00000185020 (Zfp280d-007) 72312141-72324108 nonsense_mediated_decay
ENSMUSG00000061390 (Gm7866)
predicted gene 7866 		ENSMUST00000183770 (Gm7866-001) 72174580-72174958 processed_pseudogene
ENSMUSG00000089530 (Gm25163)
predicted gene, 25163 		ENSMUST00000158905 (Gm25163-201) 72257036-72257139 snRNA
ENSMUSG00000097211 (BC065403)
cDNA sequence BC065403 		ENSMUST00000180997 (BC065403-002) 72361735-72409945 antisense
ENSMUST00000184796 (BC065403-001) 72408644-72409867 antisense
ENSMUSG00000098340 (Gm27253)
predicted gene 27253 		ENSMUST00000183670 (Gm27253-001) 72268614-72274856 lincRNA
ENSMUSG00000098412 (Gm7870)
predicted gene 7870 		ENSMUST00000184467 (Gm7870-001) 72209555-72210170 processed_pseudogene
ENSMUSG00000098492 (Gm19353)
predicted gene, 19353 		ENSMUST00000184561 (Gm19353-001) 72289667-72290111 processed_pseudogene
ENSMUSG00000098761 (Gm18821)
predicted gene, 18821 		ENSMUST00000184135 (Gm18821-001) 71908843-71909551 processed_pseudogene
ENSMUSG00000098893 (Gm17828)
predicted gene, 17828 		ENSMUST00000183380 (Gm17828-001) 72292542-72293340 processed_pseudogene
ENSMUSG00000098915 (Rpl15-ps2)
ribosomal protein L15, pseudogene 2 		ENSMUST00000184247 (Rpl15-ps2-001) 72060937-72061549 processed_pseudogene
ENSMUSG00000099020 (Gm27159)
predicted gene 27159 		ENSMUST00000185132 (Gm27159-001) 72179183-72179758 lincRNA
ENSMUSG00000099190 (Gm27188)
predicted gene 27188 		ENSMUST00000184383 (Gm27188-001) 72207706-72230306 lincRNA
ENSMUSG00000099253 (Gm7863)
predicted gene 7863 		ENSMUST00000184700 (Gm7863-001) 72128587-72129391 processed_pseudogene
ENSMUSG00000099313 (Gm27152)
predicted gene 27152 		ENSMUST00000183828 (Gm27152-001) 71948879-71948977 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OY_0001ENSDARG00000004714ENSDART00000009938ENSDART00000073766ENSDART00000131282ENSDART00000136745ENSDART00000138263ENSDART00000140338ENSDARG00000077013ENSDART00000110906CIL_0004OY_0002ENSMUSG00000032228ENSMUST00000034755ENSMUST00000183404ENSMUST00000183492ENSMUST00000183594ENSMUST00000183647ENSMUST00000183784ENSMUST00000183918ENSMUST00000183992ENSMUST00000184029ENSMUST00000184072ENSMUST00000184107ENSMUST00000184196ENSMUST00000184378ENSMUST00000184416ENSMUST00000184448ENSMUST00000184523ENSMUST00000184770ENSMUST00000184783ENSMUST00000184806ENSMUST00000184867ENSMUST00000185117ENSMUSG00000038535ENSMUST00000098576ENSMUST00000183400ENSMUST00000183410ENSMUST00000183459ENSMUST00000183468ENSMUST00000183545ENSMUST00000183608ENSMUST00000183801ENSMUST00000184019ENSMUST00000184025ENSMUST00000184036ENSMUST00000184053ENSMUST00000184141ENSMUST00000184216ENSMUST00000184248ENSMUST00000184399ENSMUST00000184517ENSMUST00000184639ENSMUST00000184786ENSMUST00000184968ENSMUST00000185020ENSMUSG00000061390ENSMUST00000183770ENSMUSG00000089530ENSMUST00000158905ENSMUSG00000097211ENSMUST00000180997ENSMUST00000184796ENSMUSG00000098340ENSMUST00000183670ENSMUSG00000098412ENSMUST00000184467ENSMUSG00000098492ENSMUST00000184561ENSMUSG00000098761ENSMUST00000184135ENSMUSG00000098893ENSMUST00000183380ENSMUSG00000098915ENSMUST00000184247ENSMUSG00000099020ENSMUST00000185132ENSMUSG00000099190ENSMUST00000184383ENSMUSG00000099253ENSMUST00000184700ENSMUSG00000099313ENSMUST00000183828
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OY_0001ENSDARG00000004714ENSDART00000009938ENSDART00000073766ENSDART00000131282ENSDART00000138263ENSDARG00000077013ENSDART00000110906CIL_0004OY_0002ENSMUSG00000032228ENSMUST00000034755ENSMUST00000183404ENSMUST00000183594ENSMUST00000183784ENSMUST00000183918ENSMUST00000183992ENSMUST00000184072ENSMUST00000184378ENSMUST00000184448ENSMUST00000184523ENSMUST00000184770ENSMUST00000184867ENSMUST00000185117ENSMUSG00000038535ENSMUST00000098576ENSMUST00000183400ENSMUST00000183410ENSMUST00000183468ENSMUST00000183801ENSMUST00000184036ENSMUST00000184399ENSMUST00000184517ENSMUST00000184786ENSMUST00000184968ENSMUST00000185020ENSMUSG00000061390ENSMUST00000183770ENSMUSG00000089530ENSMUST00000158905ENSMUSG00000097211ENSMUST00000180997ENSMUSG00000098340ENSMUST00000183670ENSMUSG00000098412ENSMUST00000184467ENSMUSG00000098492ENSMUST00000184561ENSMUSG00000098761ENSMUST00000184135ENSMUSG00000098893ENSMUST00000183380ENSMUSG00000098915ENSMUST00000184247ENSMUSG00000099020ENSMUST00000185132ENSMUSG00000099190ENSMUST00000184383ENSMUSG00000099253ENSMUST00000184700ENSMUSG00000099313ENSMUST00000183828
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004714 ENSDART00000009938 N/A N/A N/A 8.710±0.00 N/A N/A 6.913±3.52 1.672±0.23 0.299±0.00 N/A 11.167±0.00 N/A N/A N/A
ENSDART00000073766 N/A N/A N/A N/A N/A N/A 4.643±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131282 N/A N/A N/A 3.459±0.00 N/A N/A N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A
ENSDART00000136745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138263 N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A
ENSDART00000140338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000077013 ENSDART00000110906 N/A N/A N/A 2.179±1.01 N/A N/A 1.889±0.00 2.083±0.91 0.440±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032228 ENSMUST00000034755 9.819±4.70 6.494±0.93 14.455±1.12 17.905±0.73 13.659±1.80 8.218±0.40 2.772±0.77 5.475±1.72 4.828±2.66 14.573±5.13 2.296±0.37 14.358±4.01 7.482±3.04 1.365±0.00
ENSMUST00000183404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.527±0.03 N/A N/A N/A
ENSMUST00000183492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183594 N/A 12.787±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.425±0.00 22.998±0.00 N/A
ENSMUST00000183647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.576±0.00 N/A N/A
ENSMUST00000183918 N/A N/A 5.165±0.00 7.892±0.00 6.666±0.00 N/A N/A N/A N/A N/A N/A 7.005±1.08 N/A N/A
ENSMUST00000183992 9.784±0.62 N/A N/A N/A 15.451±10.34 N/A 5.225±0.00 6.246±0.00 N/A N/A N/A 12.721±2.60 N/A 2.119±0.42
ENSMUST00000184029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184072 N/A 12.417±1.41 N/A N/A N/A N/A N/A N/A 4.664±0.99 N/A N/A N/A N/A 3.927±0.00
ENSMUST00000184107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184378 N/A 23.388±4.80 N/A N/A 38.878±9.76 23.440±3.10 N/A 21.073±3.56 4.796±0.62 N/A N/A 29.655±3.11 N/A N/A
ENSMUST00000184416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184448 N/A N/A N/A N/A 11.040±1.07 N/A N/A N/A N/A 12.661±0.92 N/A N/A N/A 0.954±0.00
ENSMUST00000184523 8.527±0.83 N/A N/A N/A 7.735±0.00 N/A 3.372±0.00 3.625±0.00 N/A N/A N/A 10.852±1.89 N/A 1.562±0.00
ENSMUST00000184770 N/A N/A N/A 5.009±0.94 N/A N/A N/A N/A 1.206±0.00 N/A N/A 5.458±0.00 N/A 0.995±0.24
ENSMUST00000184783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184867 N/A 5.664±1.22 N/A 1.419±0.00 5.094±1.07 N/A N/A 3.134±0.00 1.508±0.41 N/A N/A 2.507±0.00 1.963±0.03 N/A
ENSMUST00000185117 7.983±1.31 N/A 6.623±0.83 2.965±0.00 8.394±0.71 2.611±0.00 3.512±0.49 4.467±0.80 2.666±1.00 10.499±0.74 2.121±0.52 14.610±7.30 8.807±2.84 2.093±0.87
ENSMUSG00000038535 ENSMUST00000098576 1.197±0.49 N/A 3.692±0.36 6.697±0.41 1.019±0.25 0.747±0.00 0.720±0.20 1.276±0.19 1.873±1.24 1.673±0.19 1.598±0.33 2.102±0.98 2.530±0.34 1.358±0.36
ENSMUST00000183400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.491±0.00
ENSMUST00000183410 0.575±0.00 0.765±0.00 N/A 4.554±0.00 1.077±0.03 0.533±0.06 0.758±0.14 0.617±0.02 1.214±0.69 1.423±0.00 0.576±0.03 1.779±0.54 1.832±0.85 N/A
ENSMUST00000183459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183468 N/A N/A 4.530±0.54 9.606±0.00 N/A N/A N/A N/A 2.325±1.01 N/A 1.189±0.16 4.924±0.00 2.880±0.47 N/A
ENSMUST00000183545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183801 N/A 0.628±0.16 N/A N/A N/A 0.384±0.00 0.320±0.00 N/A 0.319±0.00 N/A N/A 0.790±0.00 N/A 1.066±0.31
ENSMUST00000184019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184036 N/A 0.709±0.00 N/A 4.045±0.00 1.331±0.38 N/A N/A N/A N/A N/A N/A 3.312±0.00 1.442±0.19 3.223±0.00
ENSMUST00000184053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184399 N/A N/A N/A N/A 0.940±0.00 0.793±0.00 0.695±0.00 N/A N/A N/A N/A N/A 1.555±0.00 N/A
ENSMUST00000184517 N/A 0.630±0.00 N/A N/A 2.005±0.00 0.571±0.18 N/A N/A 0.284±0.00 1.501±0.27 N/A 1.322±0.27 N/A 1.425±0.25
ENSMUST00000184639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184786 N/A 4.771±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184968 N/A N/A N/A N/A 0.981±0.00 0.384±0.00 N/A N/A 0.279±0.00 N/A N/A 0.890±0.00 N/A N/A
ENSMUST00000185020 3.477±0.63 3.275±1.01 N/A N/A 2.510±0.78 1.738±0.48 N/A 2.727±0.44 N/A N/A N/A 4.753±0.97 N/A N/A
ENSMUSG00000061390 ENSMUST00000183770 0.419±0.00 0.346±0.10 0.163±0.02 2.610±2.57 0.328±0.13 0.748±0.43 0.249±0.00 0.462±0.35 0.180±0.06 0.238±0.06 N/A 0.689±0.21 0.485±0.39 0.227±0.10
ENSMUSG00000089530 ENSMUST00000158905 N/A N/A N/A 27.346±0.00 N/A N/A N/A N/A N/A N/A N/A 13.963±0.00 33.491±0.00 2778.170±0.00
ENSMUSG00000097211 ENSMUST00000180997 4.194±1.22 1.370±0.21 13.104±1.86 24.278±4.98 2.535±0.94 1.696±0.31 2.236±0.74 3.039±0.32 5.439±4.48 4.326±1.26 4.754±1.01 5.255±5.69 9.834±1.67 5.125±1.96
ENSMUST00000184796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098340 ENSMUST00000183670 N/A 0.319±0.00 0.103±0.00 1.522±1.75 0.278±0.03 N/A 0.157±0.03 0.262±0.08 0.043±0.01 0.113±0.00 0.470±0.00 0.705±0.64 2.467±1.91 1.709±2.98
ENSMUSG00000098412 ENSMUST00000184467 N/A N/A N/A 0.156±0.09 N/A N/A N/A N/A 0.024±0.01 0.100±0.00 0.150±0.03 0.259±0.23 0.149±0.00 0.080±0.00
ENSMUSG00000098492 ENSMUST00000184561 0.460±0.23 0.176±0.00 0.397±0.00 1.127±0.53 0.306±0.12 0.224±0.09 0.280±0.13 0.407±0.12 0.496±0.30 0.368±0.17 0.167±0.02 0.477±0.18 0.437±0.16 0.360±0.18
ENSMUSG00000098761 ENSMUST00000184135 0.341±0.00 0.461±0.12 0.209±0.00 0.666±0.42 0.559±0.33 0.511±0.00 0.231±0.00 0.261±0.09 0.189±0.13 0.498±0.28 N/A 0.402±0.22 0.119±0.00 0.188±0.08
ENSMUSG00000098893 ENSMUST00000183380 0.496±0.35 0.185±0.14 0.162±0.08 1.199±0.30 0.282±0.11 0.203±0.13 0.230±0.09 0.177±0.07 0.270±0.12 0.394±0.11 0.040±0.00 0.556±0.49 0.402±0.02 0.150±0.12
ENSMUSG00000098915 ENSMUST00000184247 1.955±2.09 1.253±0.25 0.745±0.04 0.990±0.00 0.712±0.51 4.597±3.95 0.910±0.87 0.526±0.17 0.464±0.10 2.596±0.87 N/A 0.618±0.43 4.791±7.20 0.626±0.55
ENSMUSG00000099020 ENSMUST00000185132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.00
ENSMUSG00000099190 ENSMUST00000184383 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A 0.019±0.00 N/A 0.095±0.00 0.381±0.31 0.015±0.00 0.184±0.00
ENSMUSG00000099253 ENSMUST00000184700 0.237±0.00 N/A 0.022±0.00 0.060±0.01 0.121±0.06 N/A N/A 0.048±0.00 0.060±0.06 0.067±0.01 N/A 0.046±0.00 0.548±0.79 0.046±0.00
ENSMUSG00000099313 ENSMUST00000183828 N/A N/A N/A N/A 3279.140±0.00 N/A N/A 3173.535±228.09 N/A N/A N/A N/A N/A N/A

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