C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049272 Hoxb5-001 ENSMUSG00000038700 10090 + 11:96303512-96306120 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049272
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049272 3.088±0.05 18.432±2.30 8.017±6.70 2.140±0.99 4.423±0.51 0.082±0.02 2.897±0.28 0.228±0.06 6.557±1.16 0.206±0.11 3.082±1.04 0.189±0.07 0.199±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121
CIL_0004DH CIL_0004DH_0002 CGP 11:96303336-96321638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0045446 IDA endothelial cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025449 hoxb5a-001 protein_coding Danio_rerio 0 475
ENSDART00000076161 hoxb5b-001 protein_coding Danio_rerio 0 252
ENSDART00000103134 hoxc5a-201 protein_coding Danio_rerio 3e-25 121
ENSDART00000139319 hoxc5a-001 protein_coding Danio_rerio 3e-25 121
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 2285

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