C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190470 Hoxb5-002 ENSMUSG00000038700 10090 + 11:96303336-96306121 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000190470
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000190470 0.412±0.01 2.726±0.22 0.284±0.14 0.745±0.15 0.545±0.01 0.026±0.00 0.067±0.03 0.608±0.23 0.105±0.05 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121
CIL_0004DH CIL_0004DH_0002 CGP 11:96303336-96321638

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025449 hoxb5a-001 protein_coding Danio_rerio 0 298
ENSDART00000103134 hoxc5a-201 protein_coding Danio_rerio 6e-24 117
ENSDART00000139319 hoxc5a-001 protein_coding Danio_rerio 6e-24 117
ENSDART00000076161 hoxb5b-001 protein_coding Danio_rerio 0.0000000001 73
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 1393

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